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Assessment of skin barrier function using skin images with topological data analysis

Recent developments of molecular biology have revealed diverse mechanisms of skin diseases, and precision medicine considering these mechanisms requires the frequent objective evaluation of skin phenotypes. Transepidermal water loss (TEWL) is commonly used for evaluating skin barrier function; howev...

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Autores principales: Koseki, Keita, Kawasaki, Hiroshi, Atsugi, Toru, Nakanishi, Miki, Mizuno, Makoto, Naru, Eiji, Ebihara, Tamotsu, Amagai, Masayuki, Kawakami, Eiryo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749164/
https://www.ncbi.nlm.nih.gov/pubmed/33339832
http://dx.doi.org/10.1038/s41540-020-00160-8
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author Koseki, Keita
Kawasaki, Hiroshi
Atsugi, Toru
Nakanishi, Miki
Mizuno, Makoto
Naru, Eiji
Ebihara, Tamotsu
Amagai, Masayuki
Kawakami, Eiryo
author_facet Koseki, Keita
Kawasaki, Hiroshi
Atsugi, Toru
Nakanishi, Miki
Mizuno, Makoto
Naru, Eiji
Ebihara, Tamotsu
Amagai, Masayuki
Kawakami, Eiryo
author_sort Koseki, Keita
collection PubMed
description Recent developments of molecular biology have revealed diverse mechanisms of skin diseases, and precision medicine considering these mechanisms requires the frequent objective evaluation of skin phenotypes. Transepidermal water loss (TEWL) is commonly used for evaluating skin barrier function; however, direct measurement of TEWL is time-consuming and is not convenient for daily clinical practice. Here, we propose a new skin barrier assessment method using skin images with topological data analysis (TDA). TDA enabled efficient identification of structural features from a skin image taken by a microscope. These features reflected the regularity of the skin texture. We found a significant correlation between the topological features and TEWL. Moreover, using the features as input, we trained machine-learning models to predict TEWL and obtained good accuracy (R(2) = 0.524). Our results suggest that assessment of skin barrier function by topological image analysis is promising.
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spelling pubmed-77491642020-12-21 Assessment of skin barrier function using skin images with topological data analysis Koseki, Keita Kawasaki, Hiroshi Atsugi, Toru Nakanishi, Miki Mizuno, Makoto Naru, Eiji Ebihara, Tamotsu Amagai, Masayuki Kawakami, Eiryo NPJ Syst Biol Appl Article Recent developments of molecular biology have revealed diverse mechanisms of skin diseases, and precision medicine considering these mechanisms requires the frequent objective evaluation of skin phenotypes. Transepidermal water loss (TEWL) is commonly used for evaluating skin barrier function; however, direct measurement of TEWL is time-consuming and is not convenient for daily clinical practice. Here, we propose a new skin barrier assessment method using skin images with topological data analysis (TDA). TDA enabled efficient identification of structural features from a skin image taken by a microscope. These features reflected the regularity of the skin texture. We found a significant correlation between the topological features and TEWL. Moreover, using the features as input, we trained machine-learning models to predict TEWL and obtained good accuracy (R(2) = 0.524). Our results suggest that assessment of skin barrier function by topological image analysis is promising. Nature Publishing Group UK 2020-12-18 /pmc/articles/PMC7749164/ /pubmed/33339832 http://dx.doi.org/10.1038/s41540-020-00160-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Koseki, Keita
Kawasaki, Hiroshi
Atsugi, Toru
Nakanishi, Miki
Mizuno, Makoto
Naru, Eiji
Ebihara, Tamotsu
Amagai, Masayuki
Kawakami, Eiryo
Assessment of skin barrier function using skin images with topological data analysis
title Assessment of skin barrier function using skin images with topological data analysis
title_full Assessment of skin barrier function using skin images with topological data analysis
title_fullStr Assessment of skin barrier function using skin images with topological data analysis
title_full_unstemmed Assessment of skin barrier function using skin images with topological data analysis
title_short Assessment of skin barrier function using skin images with topological data analysis
title_sort assessment of skin barrier function using skin images with topological data analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7749164/
https://www.ncbi.nlm.nih.gov/pubmed/33339832
http://dx.doi.org/10.1038/s41540-020-00160-8
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