Cargando…

Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI

When predicting a certain subject-level variable (e.g., age in years) from measured biological data (e.g., structural MRI scans), the decoding algorithm does not always preserve the distribution of the variable to predict. In such a situation, distributional transformation (DT), i.e., mapping the pr...

Descripción completa

Detalles Bibliográficos
Autor principal: Soch, Joram
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7752921/
https://www.ncbi.nlm.nih.gov/pubmed/33363488
http://dx.doi.org/10.3389/fpsyt.2020.604268
_version_ 1783625962800283648
author Soch, Joram
author_facet Soch, Joram
author_sort Soch, Joram
collection PubMed
description When predicting a certain subject-level variable (e.g., age in years) from measured biological data (e.g., structural MRI scans), the decoding algorithm does not always preserve the distribution of the variable to predict. In such a situation, distributional transformation (DT), i.e., mapping the predicted values to the variable's distribution in the training data, might improve decoding accuracy. Here, we tested the potential of DT within the 2019 Predictive Analytics Competition (PAC) which aimed at predicting chronological age of adult human subjects from structural MRI data. In a low-dimensional setting, i.e., with less features than observations, we applied multiple linear regression, support vector regression and deep neural networks for out-of-sample prediction of subject age. We found that (i) when the number of features is low, no method outperforms linear regression; and (ii) except when using deep regression, distributional transformation increases decoding performance, reducing the mean absolute error (MAE) by about half a year. We conclude that DT can be advantageous when predicting variables that are non-controlled, but have an underlying distribution in healthy or diseased populations.
format Online
Article
Text
id pubmed-7752921
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-77529212020-12-23 Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI Soch, Joram Front Psychiatry Psychiatry When predicting a certain subject-level variable (e.g., age in years) from measured biological data (e.g., structural MRI scans), the decoding algorithm does not always preserve the distribution of the variable to predict. In such a situation, distributional transformation (DT), i.e., mapping the predicted values to the variable's distribution in the training data, might improve decoding accuracy. Here, we tested the potential of DT within the 2019 Predictive Analytics Competition (PAC) which aimed at predicting chronological age of adult human subjects from structural MRI data. In a low-dimensional setting, i.e., with less features than observations, we applied multiple linear regression, support vector regression and deep neural networks for out-of-sample prediction of subject age. We found that (i) when the number of features is low, no method outperforms linear regression; and (ii) except when using deep regression, distributional transformation increases decoding performance, reducing the mean absolute error (MAE) by about half a year. We conclude that DT can be advantageous when predicting variables that are non-controlled, but have an underlying distribution in healthy or diseased populations. Frontiers Media S.A. 2020-12-08 /pmc/articles/PMC7752921/ /pubmed/33363488 http://dx.doi.org/10.3389/fpsyt.2020.604268 Text en Copyright © 2020 Soch. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Psychiatry
Soch, Joram
Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title_full Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title_fullStr Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title_full_unstemmed Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title_short Distributional Transformation Improves Decoding Accuracy When Predicting Chronological Age From Structural MRI
title_sort distributional transformation improves decoding accuracy when predicting chronological age from structural mri
topic Psychiatry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7752921/
https://www.ncbi.nlm.nih.gov/pubmed/33363488
http://dx.doi.org/10.3389/fpsyt.2020.604268
work_keys_str_mv AT sochjoram distributionaltransformationimprovesdecodingaccuracywhenpredictingchronologicalagefromstructuralmri