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sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue

The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive proce...

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Detalles Bibliográficos
Autores principales: Gao, Yu, Zhao, Xinyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7753947/
https://www.ncbi.nlm.nih.gov/pubmed/33364621
http://dx.doi.org/10.1016/j.xpro.2020.100231
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author Gao, Yu
Zhao, Xinyu
author_facet Gao, Yu
Zhao, Xinyu
author_sort Gao, Yu
collection PubMed
description The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive processes. This protocol describes cell-type-specific expression of tagged ribosome and the use of ribosome tagging followed by RNA-seq to identify translatome of low number and sparse cells in mouse brains without disruptive cell isolation. For complete details on the use and execution of this protocol, please refer to Gao et al. (2020)
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spelling pubmed-77539472020-12-23 sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue Gao, Yu Zhao, Xinyu STAR Protoc Protocol The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive processes. This protocol describes cell-type-specific expression of tagged ribosome and the use of ribosome tagging followed by RNA-seq to identify translatome of low number and sparse cells in mouse brains without disruptive cell isolation. For complete details on the use and execution of this protocol, please refer to Gao et al. (2020) Elsevier 2020-12-19 /pmc/articles/PMC7753947/ /pubmed/33364621 http://dx.doi.org/10.1016/j.xpro.2020.100231 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Gao, Yu
Zhao, Xinyu
sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title_full sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title_fullStr sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title_full_unstemmed sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title_short sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
title_sort sncribotag-seq: cell-type-specific ribotag-seq for cells in low abundance in mouse brain tissue
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7753947/
https://www.ncbi.nlm.nih.gov/pubmed/33364621
http://dx.doi.org/10.1016/j.xpro.2020.100231
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