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sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue
The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive proce...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7753947/ https://www.ncbi.nlm.nih.gov/pubmed/33364621 http://dx.doi.org/10.1016/j.xpro.2020.100231 |
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author | Gao, Yu Zhao, Xinyu |
author_facet | Gao, Yu Zhao, Xinyu |
author_sort | Gao, Yu |
collection | PubMed |
description | The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive processes. This protocol describes cell-type-specific expression of tagged ribosome and the use of ribosome tagging followed by RNA-seq to identify translatome of low number and sparse cells in mouse brains without disruptive cell isolation. For complete details on the use and execution of this protocol, please refer to Gao et al. (2020) |
format | Online Article Text |
id | pubmed-7753947 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-77539472020-12-23 sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue Gao, Yu Zhao, Xinyu STAR Protoc Protocol The mammalian brain has over 10,000 types of neurons. Therefore, studying gene regulation in the brain requires effective strategies for targeting specific cell types, especially those in low abundance. Cell isolation may alter gene expression and is disruptive to mature neurons with extensive processes. This protocol describes cell-type-specific expression of tagged ribosome and the use of ribosome tagging followed by RNA-seq to identify translatome of low number and sparse cells in mouse brains without disruptive cell isolation. For complete details on the use and execution of this protocol, please refer to Gao et al. (2020) Elsevier 2020-12-19 /pmc/articles/PMC7753947/ /pubmed/33364621 http://dx.doi.org/10.1016/j.xpro.2020.100231 Text en © 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Gao, Yu Zhao, Xinyu sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title | sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title_full | sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title_fullStr | sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title_full_unstemmed | sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title_short | sncRiboTag-Seq: cell-type-specific RiboTag-Seq for cells in low abundance in mouse brain tissue |
title_sort | sncribotag-seq: cell-type-specific ribotag-seq for cells in low abundance in mouse brain tissue |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7753947/ https://www.ncbi.nlm.nih.gov/pubmed/33364621 http://dx.doi.org/10.1016/j.xpro.2020.100231 |
work_keys_str_mv | AT gaoyu sncribotagseqcelltypespecificribotagseqforcellsinlowabundanceinmousebraintissue AT zhaoxinyu sncribotagseqcelltypespecificribotagseqforcellsinlowabundanceinmousebraintissue |