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Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7754328/ https://www.ncbi.nlm.nih.gov/pubmed/32687667 http://dx.doi.org/10.1002/cbic.202000417 |
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author | Täubert, Sebastian Zhang, Yong‐Hui Martinez, Mitcheell Maestre Siepel, Florian Wöltjen, Edith Leonov, Andrei Griesinger, Christian |
author_facet | Täubert, Sebastian Zhang, Yong‐Hui Martinez, Mitcheell Maestre Siepel, Florian Wöltjen, Edith Leonov, Andrei Griesinger, Christian |
author_sort | Täubert, Sebastian |
collection | PubMed |
description | Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous report, due to the high affinities of lanthanides for the phosphodiester backbone of nucleotides and difficult organic synthesis. Herein, we report successful attachment of a lanthanide tag to a chemically synthesized oligonucleotide via a disulfide bond. NMR experiments reveal PCSs of up to 1 ppm and H−H RDCs of up to 8 Hz at 950 MHz. Although weaker magnetic alignment was achieved than with proteins, the paramagnetic data could be fitted to the known structure of the DNA, taking the mobility of the tag into account. While further rigidification of the tag is desirable, this tag could also be used to measure heteronuclear RDCs of (13)C,(15)N‐labeled chemically synthesized DNA and RNA. |
format | Online Article Text |
id | pubmed-7754328 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77543282020-12-23 Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR Täubert, Sebastian Zhang, Yong‐Hui Martinez, Mitcheell Maestre Siepel, Florian Wöltjen, Edith Leonov, Andrei Griesinger, Christian Chembiochem Communications Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous report, due to the high affinities of lanthanides for the phosphodiester backbone of nucleotides and difficult organic synthesis. Herein, we report successful attachment of a lanthanide tag to a chemically synthesized oligonucleotide via a disulfide bond. NMR experiments reveal PCSs of up to 1 ppm and H−H RDCs of up to 8 Hz at 950 MHz. Although weaker magnetic alignment was achieved than with proteins, the paramagnetic data could be fitted to the known structure of the DNA, taking the mobility of the tag into account. While further rigidification of the tag is desirable, this tag could also be used to measure heteronuclear RDCs of (13)C,(15)N‐labeled chemically synthesized DNA and RNA. John Wiley and Sons Inc. 2020-08-17 2020-12-01 /pmc/articles/PMC7754328/ /pubmed/32687667 http://dx.doi.org/10.1002/cbic.202000417 Text en © 2020 The Authors. Published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Communications Täubert, Sebastian Zhang, Yong‐Hui Martinez, Mitcheell Maestre Siepel, Florian Wöltjen, Edith Leonov, Andrei Griesinger, Christian Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title | Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title_full | Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title_fullStr | Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title_full_unstemmed | Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title_short | Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR |
title_sort | lanthanide tagging of oligonucleotides to nucleobase for paramagnetic nmr |
topic | Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7754328/ https://www.ncbi.nlm.nih.gov/pubmed/32687667 http://dx.doi.org/10.1002/cbic.202000417 |
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