Cargando…

Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR

Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous...

Descripción completa

Detalles Bibliográficos
Autores principales: Täubert, Sebastian, Zhang, Yong‐Hui, Martinez, Mitcheell Maestre, Siepel, Florian, Wöltjen, Edith, Leonov, Andrei, Griesinger, Christian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7754328/
https://www.ncbi.nlm.nih.gov/pubmed/32687667
http://dx.doi.org/10.1002/cbic.202000417
_version_ 1783626169697959936
author Täubert, Sebastian
Zhang, Yong‐Hui
Martinez, Mitcheell Maestre
Siepel, Florian
Wöltjen, Edith
Leonov, Andrei
Griesinger, Christian
author_facet Täubert, Sebastian
Zhang, Yong‐Hui
Martinez, Mitcheell Maestre
Siepel, Florian
Wöltjen, Edith
Leonov, Andrei
Griesinger, Christian
author_sort Täubert, Sebastian
collection PubMed
description Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous report, due to the high affinities of lanthanides for the phosphodiester backbone of nucleotides and difficult organic synthesis. Herein, we report successful attachment of a lanthanide tag to a chemically synthesized oligonucleotide via a disulfide bond. NMR experiments reveal PCSs of up to 1 ppm and H−H RDCs of up to 8 Hz at 950 MHz. Although weaker magnetic alignment was achieved than with proteins, the paramagnetic data could be fitted to the known structure of the DNA, taking the mobility of the tag into account. While further rigidification of the tag is desirable, this tag could also be used to measure heteronuclear RDCs of (13)C,(15)N‐labeled chemically synthesized DNA and RNA.
format Online
Article
Text
id pubmed-7754328
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-77543282020-12-23 Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR Täubert, Sebastian Zhang, Yong‐Hui Martinez, Mitcheell Maestre Siepel, Florian Wöltjen, Edith Leonov, Andrei Griesinger, Christian Chembiochem Communications Although lanthanide tags, which have large anisotropic magnetic susceptibilities, have already been introduced to enrich NMR parameters by long‐range pseudoconact shifts (PCSs) and residual dipolar couplings (RDCs) of proteins, their application to nucleotides has so far been limited to one previous report, due to the high affinities of lanthanides for the phosphodiester backbone of nucleotides and difficult organic synthesis. Herein, we report successful attachment of a lanthanide tag to a chemically synthesized oligonucleotide via a disulfide bond. NMR experiments reveal PCSs of up to 1 ppm and H−H RDCs of up to 8 Hz at 950 MHz. Although weaker magnetic alignment was achieved than with proteins, the paramagnetic data could be fitted to the known structure of the DNA, taking the mobility of the tag into account. While further rigidification of the tag is desirable, this tag could also be used to measure heteronuclear RDCs of (13)C,(15)N‐labeled chemically synthesized DNA and RNA. John Wiley and Sons Inc. 2020-08-17 2020-12-01 /pmc/articles/PMC7754328/ /pubmed/32687667 http://dx.doi.org/10.1002/cbic.202000417 Text en © 2020 The Authors. Published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Communications
Täubert, Sebastian
Zhang, Yong‐Hui
Martinez, Mitcheell Maestre
Siepel, Florian
Wöltjen, Edith
Leonov, Andrei
Griesinger, Christian
Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title_full Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title_fullStr Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title_full_unstemmed Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title_short Lanthanide Tagging of Oligonucleotides to Nucleobase for Paramagnetic NMR
title_sort lanthanide tagging of oligonucleotides to nucleobase for paramagnetic nmr
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7754328/
https://www.ncbi.nlm.nih.gov/pubmed/32687667
http://dx.doi.org/10.1002/cbic.202000417
work_keys_str_mv AT taubertsebastian lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT zhangyonghui lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT martinezmitcheellmaestre lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT siepelflorian lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT woltjenedith lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT leonovandrei lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr
AT griesingerchristian lanthanidetaggingofoligonucleotidestonucleobaseforparamagneticnmr