Cargando…

Using Mobility Data to Understand and Forecast COVID19 Dynamics

Disease dynamics, human mobility, and public policies co-evolve during a pandemic such as COVID-19. Understanding dynamic human mobility changes and spatial interaction patterns are crucial for understanding and forecasting COVID-19 dynamics. We introduce a novel graph-based neural network(GNN) to i...

Descripción completa

Detalles Bibliográficos
Autores principales: Wang, Lijing, Ben, Xue, Adiga, Aniruddha, Sadilek, Adam, Tendulkar, Ashish, Venkatramanan, Srinivasan, Vullikanti, Anil, Aggarwal, Gaurav, Talekar, Alok, Chen, Jiangzhuo, Lewis, Bryan, Swarup, Samarth, Kapoor, Amol, Tambe, Milind, Marathe, Madhav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755147/
https://www.ncbi.nlm.nih.gov/pubmed/33354685
http://dx.doi.org/10.1101/2020.12.13.20248129
_version_ 1783626305267302400
author Wang, Lijing
Ben, Xue
Adiga, Aniruddha
Sadilek, Adam
Tendulkar, Ashish
Venkatramanan, Srinivasan
Vullikanti, Anil
Aggarwal, Gaurav
Talekar, Alok
Chen, Jiangzhuo
Lewis, Bryan
Swarup, Samarth
Kapoor, Amol
Tambe, Milind
Marathe, Madhav
author_facet Wang, Lijing
Ben, Xue
Adiga, Aniruddha
Sadilek, Adam
Tendulkar, Ashish
Venkatramanan, Srinivasan
Vullikanti, Anil
Aggarwal, Gaurav
Talekar, Alok
Chen, Jiangzhuo
Lewis, Bryan
Swarup, Samarth
Kapoor, Amol
Tambe, Milind
Marathe, Madhav
author_sort Wang, Lijing
collection PubMed
description Disease dynamics, human mobility, and public policies co-evolve during a pandemic such as COVID-19. Understanding dynamic human mobility changes and spatial interaction patterns are crucial for understanding and forecasting COVID-19 dynamics. We introduce a novel graph-based neural network(GNN) to incorporate global aggregated mobility flows for a better understanding of the impact of human mobility on COVID-19 dynamics as well as better forecasting of disease dynamics. We propose a recurrent message passing graph neural network that embeds spatio-temporal disease dynamics and human mobility dynamics for daily state-level new confirmed cases forecasting. This work represents one of the early papers on the use of GNNs to forecast COVID-19 incidence dynamics and our methods are competitive to existing methods. We show that the spatial and temporal dynamic mobility graph leveraged by the graph neural network enables better long-term forecasting performance compared to baselines.
format Online
Article
Text
id pubmed-7755147
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Cold Spring Harbor Laboratory
record_format MEDLINE/PubMed
spelling pubmed-77551472020-12-23 Using Mobility Data to Understand and Forecast COVID19 Dynamics Wang, Lijing Ben, Xue Adiga, Aniruddha Sadilek, Adam Tendulkar, Ashish Venkatramanan, Srinivasan Vullikanti, Anil Aggarwal, Gaurav Talekar, Alok Chen, Jiangzhuo Lewis, Bryan Swarup, Samarth Kapoor, Amol Tambe, Milind Marathe, Madhav medRxiv Article Disease dynamics, human mobility, and public policies co-evolve during a pandemic such as COVID-19. Understanding dynamic human mobility changes and spatial interaction patterns are crucial for understanding and forecasting COVID-19 dynamics. We introduce a novel graph-based neural network(GNN) to incorporate global aggregated mobility flows for a better understanding of the impact of human mobility on COVID-19 dynamics as well as better forecasting of disease dynamics. We propose a recurrent message passing graph neural network that embeds spatio-temporal disease dynamics and human mobility dynamics for daily state-level new confirmed cases forecasting. This work represents one of the early papers on the use of GNNs to forecast COVID-19 incidence dynamics and our methods are competitive to existing methods. We show that the spatial and temporal dynamic mobility graph leveraged by the graph neural network enables better long-term forecasting performance compared to baselines. Cold Spring Harbor Laboratory 2020-12-15 /pmc/articles/PMC7755147/ /pubmed/33354685 http://dx.doi.org/10.1101/2020.12.13.20248129 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Wang, Lijing
Ben, Xue
Adiga, Aniruddha
Sadilek, Adam
Tendulkar, Ashish
Venkatramanan, Srinivasan
Vullikanti, Anil
Aggarwal, Gaurav
Talekar, Alok
Chen, Jiangzhuo
Lewis, Bryan
Swarup, Samarth
Kapoor, Amol
Tambe, Milind
Marathe, Madhav
Using Mobility Data to Understand and Forecast COVID19 Dynamics
title Using Mobility Data to Understand and Forecast COVID19 Dynamics
title_full Using Mobility Data to Understand and Forecast COVID19 Dynamics
title_fullStr Using Mobility Data to Understand and Forecast COVID19 Dynamics
title_full_unstemmed Using Mobility Data to Understand and Forecast COVID19 Dynamics
title_short Using Mobility Data to Understand and Forecast COVID19 Dynamics
title_sort using mobility data to understand and forecast covid19 dynamics
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755147/
https://www.ncbi.nlm.nih.gov/pubmed/33354685
http://dx.doi.org/10.1101/2020.12.13.20248129
work_keys_str_mv AT wanglijing usingmobilitydatatounderstandandforecastcovid19dynamics
AT benxue usingmobilitydatatounderstandandforecastcovid19dynamics
AT adigaaniruddha usingmobilitydatatounderstandandforecastcovid19dynamics
AT sadilekadam usingmobilitydatatounderstandandforecastcovid19dynamics
AT tendulkarashish usingmobilitydatatounderstandandforecastcovid19dynamics
AT venkatramanansrinivasan usingmobilitydatatounderstandandforecastcovid19dynamics
AT vullikantianil usingmobilitydatatounderstandandforecastcovid19dynamics
AT aggarwalgaurav usingmobilitydatatounderstandandforecastcovid19dynamics
AT talekaralok usingmobilitydatatounderstandandforecastcovid19dynamics
AT chenjiangzhuo usingmobilitydatatounderstandandforecastcovid19dynamics
AT lewisbryan usingmobilitydatatounderstandandforecastcovid19dynamics
AT swarupsamarth usingmobilitydatatounderstandandforecastcovid19dynamics
AT kapooramol usingmobilitydatatounderstandandforecastcovid19dynamics
AT tambemilind usingmobilitydatatounderstandandforecastcovid19dynamics
AT marathemadhav usingmobilitydatatounderstandandforecastcovid19dynamics