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The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)

The complete mitogenome sequence of the milk shark, of which Rhizoprionodon acutus was determined using long PCR. The genome was 16,693 bp in length and it contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 D-loop region. The overall base composition of the heavy...

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Autores principales: Liu, Yan, Shan, BinBin, Yang, ChangPing, Zhao, Yu, Liu, ManTing, Xie, QiJian, Sun, DianRong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755320/
https://www.ncbi.nlm.nih.gov/pubmed/33426273
http://dx.doi.org/10.1080/23802359.2019.1703578
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author Liu, Yan
Shan, BinBin
Yang, ChangPing
Zhao, Yu
Liu, ManTing
Xie, QiJian
Sun, DianRong
author_facet Liu, Yan
Shan, BinBin
Yang, ChangPing
Zhao, Yu
Liu, ManTing
Xie, QiJian
Sun, DianRong
author_sort Liu, Yan
collection PubMed
description The complete mitogenome sequence of the milk shark, of which Rhizoprionodon acutus was determined using long PCR. The genome was 16,693 bp in length and it contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 D-loop region. The overall base composition of the heavy strand is A (31.63%), C (23.91%), T (31.38%), and G (13.08%). However, the base composition of A (31.38%), C (13.08%), T (31.63%), and G (23.91%) was in the light strand. Except for that COXI began with GTG, all the protein initiation codons were ATG. What’s more, all the protein termination codons were TAA, in addition to ND2, ND3, and Cytb ended with TAG, COXII and ND4 finished only with T, and ND6 with AGG. Moreover, based on thirteen concatenated PCGs nucleotide datasets, the phylogenetic analysis showed high value support for the following sister clade among the two genera (Rhizoprionodon acutus, Rhizoprionodon; Scoliodon macrorhynchos and Scoliodon laticaudus, Scoliodon).
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spelling pubmed-77553202021-01-08 The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837) Liu, Yan Shan, BinBin Yang, ChangPing Zhao, Yu Liu, ManTing Xie, QiJian Sun, DianRong Mitochondrial DNA B Resour Mitogenome Announcement The complete mitogenome sequence of the milk shark, of which Rhizoprionodon acutus was determined using long PCR. The genome was 16,693 bp in length and it contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, and 1 D-loop region. The overall base composition of the heavy strand is A (31.63%), C (23.91%), T (31.38%), and G (13.08%). However, the base composition of A (31.38%), C (13.08%), T (31.63%), and G (23.91%) was in the light strand. Except for that COXI began with GTG, all the protein initiation codons were ATG. What’s more, all the protein termination codons were TAA, in addition to ND2, ND3, and Cytb ended with TAG, COXII and ND4 finished only with T, and ND6 with AGG. Moreover, based on thirteen concatenated PCGs nucleotide datasets, the phylogenetic analysis showed high value support for the following sister clade among the two genera (Rhizoprionodon acutus, Rhizoprionodon; Scoliodon macrorhynchos and Scoliodon laticaudus, Scoliodon). Taylor & Francis 2019-12-18 /pmc/articles/PMC7755320/ /pubmed/33426273 http://dx.doi.org/10.1080/23802359.2019.1703578 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Liu, Yan
Shan, BinBin
Yang, ChangPing
Zhao, Yu
Liu, ManTing
Xie, QiJian
Sun, DianRong
The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title_full The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title_fullStr The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title_full_unstemmed The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title_short The complete mitochondrial genome of milk shark, Rhizoprionodon acutus (Ruppell 1837)
title_sort complete mitochondrial genome of milk shark, rhizoprionodon acutus (ruppell 1837)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755320/
https://www.ncbi.nlm.nih.gov/pubmed/33426273
http://dx.doi.org/10.1080/23802359.2019.1703578
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