Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth

Ilex viridis Champ. ex Benth. is domestic to southern China. In the present work, the complete chloroplast (cp) genome sequence of Ilex viridis was assembled and characterized by high-throughput sequencing analyses. The chloroplast genome was 157,701 bp in length, consisting of large single-copy (LS...

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Autores principales: Shan, Zhenyu, Zhou, Biyao, Li, Yao, Liu, Daosen, Li, Wei, Ma, Julin, Su, Tao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755321/
https://www.ncbi.nlm.nih.gov/pubmed/33426279
http://dx.doi.org/10.1080/23802359.2020.1719913
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author Shan, Zhenyu
Zhou, Biyao
Li, Yao
Liu, Daosen
Li, Wei
Ma, Julin
Su, Tao
author_facet Shan, Zhenyu
Zhou, Biyao
Li, Yao
Liu, Daosen
Li, Wei
Ma, Julin
Su, Tao
author_sort Shan, Zhenyu
collection PubMed
description Ilex viridis Champ. ex Benth. is domestic to southern China. In the present work, the complete chloroplast (cp) genome sequence of Ilex viridis was assembled and characterized by high-throughput sequencing analyses. The chloroplast genome was 157,701 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 87,177 bp and 18,394 bp, respectively, which were separated by a pair of 26,065 bp inverted repeat (IR) regions. The genome was predicted to contain 134 genes, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic tree reconstructed using 13 chloroplast genomes reveals that I. viridis is mostly related to Ilex szechwanensis.
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spelling pubmed-77553212021-01-08 Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth Shan, Zhenyu Zhou, Biyao Li, Yao Liu, Daosen Li, Wei Ma, Julin Su, Tao Mitochondrial DNA B Resour Mitogenome Announcement Ilex viridis Champ. ex Benth. is domestic to southern China. In the present work, the complete chloroplast (cp) genome sequence of Ilex viridis was assembled and characterized by high-throughput sequencing analyses. The chloroplast genome was 157,701 bp in length, consisting of large single-copy (LSC) and small single-copy (SSC) regions of 87,177 bp and 18,394 bp, respectively, which were separated by a pair of 26,065 bp inverted repeat (IR) regions. The genome was predicted to contain 134 genes, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the genome is 37.7%. The phylogenetic tree reconstructed using 13 chloroplast genomes reveals that I. viridis is mostly related to Ilex szechwanensis. Taylor & Francis 2020-01-27 /pmc/articles/PMC7755321/ /pubmed/33426279 http://dx.doi.org/10.1080/23802359.2020.1719913 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Shan, Zhenyu
Zhou, Biyao
Li, Yao
Liu, Daosen
Li, Wei
Ma, Julin
Su, Tao
Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title_full Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title_fullStr Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title_full_unstemmed Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title_short Complete chloroplast genome sequence and phylogenetic analysis of Ilex viridis Champ. ex Benth
title_sort complete chloroplast genome sequence and phylogenetic analysis of ilex viridis champ. ex benth
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7755321/
https://www.ncbi.nlm.nih.gov/pubmed/33426279
http://dx.doi.org/10.1080/23802359.2020.1719913
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