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CellML 2.0

We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equati...

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Detalles Bibliográficos
Autores principales: Clerx, Michael, Cooling, Michael T., Cooper, Jonathan, Garny, Alan, Moyle, Keri, Nickerson, David P., Nielsen, Poul M. F., Sorby, Hugh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756617/
https://www.ncbi.nlm.nih.gov/pubmed/32759406
http://dx.doi.org/10.1515/jib-2020-0021
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author Clerx, Michael
Cooling, Michael T.
Cooper, Jonathan
Garny, Alan
Moyle, Keri
Nickerson, David P.
Nielsen, Poul M. F.
Sorby, Hugh
author_facet Clerx, Michael
Cooling, Michael T.
Cooper, Jonathan
Garny, Alan
Moyle, Keri
Nickerson, David P.
Nielsen, Poul M. F.
Sorby, Hugh
author_sort Clerx, Michael
collection PubMed
description We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage.
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spelling pubmed-77566172020-12-30 CellML 2.0 Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh J Integr Bioinform Article We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. De Gruyter 2020-07-24 /pmc/articles/PMC7756617/ /pubmed/32759406 http://dx.doi.org/10.1515/jib-2020-0021 Text en © 2020 Michael Clerx et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by/4.0 This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Article
Clerx, Michael
Cooling, Michael T.
Cooper, Jonathan
Garny, Alan
Moyle, Keri
Nickerson, David P.
Nielsen, Poul M. F.
Sorby, Hugh
CellML 2.0
title CellML 2.0
title_full CellML 2.0
title_fullStr CellML 2.0
title_full_unstemmed CellML 2.0
title_short CellML 2.0
title_sort cellml 2.0
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756617/
https://www.ncbi.nlm.nih.gov/pubmed/32759406
http://dx.doi.org/10.1515/jib-2020-0021
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