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CellML 2.0
We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equati...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756617/ https://www.ncbi.nlm.nih.gov/pubmed/32759406 http://dx.doi.org/10.1515/jib-2020-0021 |
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author | Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh |
author_facet | Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh |
author_sort | Clerx, Michael |
collection | PubMed |
description | We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. |
format | Online Article Text |
id | pubmed-7756617 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-77566172020-12-30 CellML 2.0 Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh J Integr Bioinform Article We present here CellML 2.0, an XML-based language for describing and exchanging mathematical models of physiological systems. MathML embedded in CellML documents is used to define the underlying mathematics of models. Models consist of a network of reusable components, each with variables and equations giving relationships between those variables. Models may import other models to create systems of increasing complexity. CellML 2.0 is defined by the normative specification presented here, prescribing the CellML syntax and the rules by which it should be used. The normative specification is intended primarily for the developers of software tools which directly consume CellML syntax. Users of CellML models may prefer to browse the informative rendering of the specification (https://cellml.org/specifications/cellml_2.0/) which extends the normative specification with explanations of the rules combined with examples of their usage. De Gruyter 2020-07-24 /pmc/articles/PMC7756617/ /pubmed/32759406 http://dx.doi.org/10.1515/jib-2020-0021 Text en © 2020 Michael Clerx et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by/4.0 This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Article Clerx, Michael Cooling, Michael T. Cooper, Jonathan Garny, Alan Moyle, Keri Nickerson, David P. Nielsen, Poul M. F. Sorby, Hugh CellML 2.0 |
title | CellML 2.0 |
title_full | CellML 2.0 |
title_fullStr | CellML 2.0 |
title_full_unstemmed | CellML 2.0 |
title_short | CellML 2.0 |
title_sort | cellml 2.0 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756617/ https://www.ncbi.nlm.nih.gov/pubmed/32759406 http://dx.doi.org/10.1515/jib-2020-0021 |
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