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Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756622/ https://www.ncbi.nlm.nih.gov/pubmed/32750035 http://dx.doi.org/10.1515/jib-2020-0018 |
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author | Smith, Lucian P. Moodie, Stuart L. Bergmann, Frank T. Gillespie, Colin Keating, Sarah M. König, Matthias Myers, Chris J. Swat, Maciek J. Wilkinson, Darren J. Hucka, Michael |
author_facet | Smith, Lucian P. Moodie, Stuart L. Bergmann, Frank T. Gillespie, Colin Keating, Sarah M. König, Matthias Myers, Chris J. Swat, Maciek J. Wilkinson, Darren J. Hucka, Michael |
author_sort | Smith, Lucian P. |
collection | PubMed |
description | Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity. |
format | Online Article Text |
id | pubmed-7756622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-77566222020-12-30 Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 Smith, Lucian P. Moodie, Stuart L. Bergmann, Frank T. Gillespie, Colin Keating, Sarah M. König, Matthias Myers, Chris J. Swat, Maciek J. Wilkinson, Darren J. Hucka, Michael J Integr Bioinform Article Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity. De Gruyter 2020-07-20 /pmc/articles/PMC7756622/ /pubmed/32750035 http://dx.doi.org/10.1515/jib-2020-0018 Text en © 2020 Lucian P. Smith et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by/4.0 This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Article Smith, Lucian P. Moodie, Stuart L. Bergmann, Frank T. Gillespie, Colin Keating, Sarah M. König, Matthias Myers, Chris J. Swat, Maciek J. Wilkinson, Darren J. Hucka, Michael Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title | Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title_full | Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title_fullStr | Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title_full_unstemmed | Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title_short | Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 |
title_sort | systems biology markup language (sbml) level 3 package: distributions, version 1, release 1 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756622/ https://www.ncbi.nlm.nih.gov/pubmed/32750035 http://dx.doi.org/10.1515/jib-2020-0018 |
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