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Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1

Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact...

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Autores principales: Smith, Lucian P., Moodie, Stuart L., Bergmann, Frank T., Gillespie, Colin, Keating, Sarah M., König, Matthias, Myers, Chris J., Swat, Maciek J., Wilkinson, Darren J., Hucka, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756622/
https://www.ncbi.nlm.nih.gov/pubmed/32750035
http://dx.doi.org/10.1515/jib-2020-0018
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author Smith, Lucian P.
Moodie, Stuart L.
Bergmann, Frank T.
Gillespie, Colin
Keating, Sarah M.
König, Matthias
Myers, Chris J.
Swat, Maciek J.
Wilkinson, Darren J.
Hucka, Michael
author_facet Smith, Lucian P.
Moodie, Stuart L.
Bergmann, Frank T.
Gillespie, Colin
Keating, Sarah M.
König, Matthias
Myers, Chris J.
Swat, Maciek J.
Wilkinson, Darren J.
Hucka, Michael
author_sort Smith, Lucian P.
collection PubMed
description Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity.
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spelling pubmed-77566222020-12-30 Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1 Smith, Lucian P. Moodie, Stuart L. Bergmann, Frank T. Gillespie, Colin Keating, Sarah M. König, Matthias Myers, Chris J. Swat, Maciek J. Wilkinson, Darren J. Hucka, Michael J Integr Bioinform Article Biological models often contain elements that have inexact numerical values, since they are based on values that are stochastic in nature or data that contains uncertainty. The Systems Biology Markup Language (SBML) Level 3 Core specification does not include an explicit mechanism to include inexact or stochastic values in a model, but it does provide a mechanism for SBML packages to extend the Core specification and add additional syntactic constructs. The SBML Distributions package for SBML Level 3 adds the necessary features to allow models to encode information about the distribution and uncertainty of values underlying a quantity. De Gruyter 2020-07-20 /pmc/articles/PMC7756622/ /pubmed/32750035 http://dx.doi.org/10.1515/jib-2020-0018 Text en © 2020 Lucian P. Smith et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by/4.0 This work is licensed under the Creative Commons Attribution 4.0 International License.
spellingShingle Article
Smith, Lucian P.
Moodie, Stuart L.
Bergmann, Frank T.
Gillespie, Colin
Keating, Sarah M.
König, Matthias
Myers, Chris J.
Swat, Maciek J.
Wilkinson, Darren J.
Hucka, Michael
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title_full Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title_fullStr Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title_full_unstemmed Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title_short Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
title_sort systems biology markup language (sbml) level 3 package: distributions, version 1, release 1
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756622/
https://www.ncbi.nlm.nih.gov/pubmed/32750035
http://dx.doi.org/10.1515/jib-2020-0018
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