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Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data

NMR spectroscopy offers unique benefits for ligand binding studies on isotopically labelled target proteins. These benefits include atomic resolution, direct distinction of binding sites and modes, a lowest detectable affinity limit, and function independent setup. Yet, retracing protein signal assi...

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Autores principales: Romero, Javier A., Nawrocka, Ewa K., Shchukina, Alexandra, Blanco, Francisco J., Diercks, Tammo, Kazimierczuk, Krzysztof
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756666/
https://www.ncbi.nlm.nih.gov/pubmed/32852098
http://dx.doi.org/10.1002/anie.202009479
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author Romero, Javier A.
Nawrocka, Ewa K.
Shchukina, Alexandra
Blanco, Francisco J.
Diercks, Tammo
Kazimierczuk, Krzysztof
author_facet Romero, Javier A.
Nawrocka, Ewa K.
Shchukina, Alexandra
Blanco, Francisco J.
Diercks, Tammo
Kazimierczuk, Krzysztof
author_sort Romero, Javier A.
collection PubMed
description NMR spectroscopy offers unique benefits for ligand binding studies on isotopically labelled target proteins. These benefits include atomic resolution, direct distinction of binding sites and modes, a lowest detectable affinity limit, and function independent setup. Yet, retracing protein signal assignments from apo to holo states to derive exact dissociation constants and chemical shift perturbation amplitudes (for ligand docking and structure‐based optimization) requires lengthy titration series of 2D heteronuclear correlation spectra at variable ligand concentration that may exceed the protein's lifetime and available spectrometer time. We present a novel method to overcome this critical limitation, based on non‐stationary complementary non‐uniform sampling (NOSCO NUS) combined with a robust particle swarm optimization algorithm. We illustrate its potential in two challenging studies with very distinct protein sizes and binding affinities, showing that NOSCO NUS can reduce measurement times by an order of magnitude to make such highly informative NMR titration studies more broadly feasible.
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spelling pubmed-77566662020-12-28 Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data Romero, Javier A. Nawrocka, Ewa K. Shchukina, Alexandra Blanco, Francisco J. Diercks, Tammo Kazimierczuk, Krzysztof Angew Chem Int Ed Engl Communications NMR spectroscopy offers unique benefits for ligand binding studies on isotopically labelled target proteins. These benefits include atomic resolution, direct distinction of binding sites and modes, a lowest detectable affinity limit, and function independent setup. Yet, retracing protein signal assignments from apo to holo states to derive exact dissociation constants and chemical shift perturbation amplitudes (for ligand docking and structure‐based optimization) requires lengthy titration series of 2D heteronuclear correlation spectra at variable ligand concentration that may exceed the protein's lifetime and available spectrometer time. We present a novel method to overcome this critical limitation, based on non‐stationary complementary non‐uniform sampling (NOSCO NUS) combined with a robust particle swarm optimization algorithm. We illustrate its potential in two challenging studies with very distinct protein sizes and binding affinities, showing that NOSCO NUS can reduce measurement times by an order of magnitude to make such highly informative NMR titration studies more broadly feasible. John Wiley and Sons Inc. 2020-09-29 2020-12-21 /pmc/articles/PMC7756666/ /pubmed/32852098 http://dx.doi.org/10.1002/anie.202009479 Text en © 2020 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Communications
Romero, Javier A.
Nawrocka, Ewa K.
Shchukina, Alexandra
Blanco, Francisco J.
Diercks, Tammo
Kazimierczuk, Krzysztof
Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title_full Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title_fullStr Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title_full_unstemmed Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title_short Non‐Stationary Complementary Non‐Uniform Sampling (NOSCO NUS) for Fast Acquisition of Serial 2D NMR Titration Data
title_sort non‐stationary complementary non‐uniform sampling (nosco nus) for fast acquisition of serial 2d nmr titration data
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756666/
https://www.ncbi.nlm.nih.gov/pubmed/32852098
http://dx.doi.org/10.1002/anie.202009479
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