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COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data
Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil‐to‐atmosphere CO(2) flux, commonly though imprecisely te...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756728/ https://www.ncbi.nlm.nih.gov/pubmed/33026137 http://dx.doi.org/10.1111/gcb.15353 |
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author | Bond‐Lamberty, Ben Christianson, Danielle S. Malhotra, Avni Pennington, Stephanie C. Sihi, Debjani AghaKouchak, Amir Anjileli, Hassan Altaf Arain, M. Armesto, Juan J. Ashraf, Samaneh Ataka, Mioko Baldocchi, Dennis Andrew Black, Thomas Buchmann, Nina Carbone, Mariah S. Chang, Shih‐Chieh Crill, Patrick Curtis, Peter S. Davidson, Eric A. Desai, Ankur R. Drake, John E. El‐Madany, Tarek S. Gavazzi, Michael Görres, Carolyn‐Monika Gough, Christopher M. Goulden, Michael Gregg, Jillian Gutiérrez del Arroyo, Omar He, Jin‐Sheng Hirano, Takashi Hopple, Anya Hughes, Holly Järveoja, Järvi Jassal, Rachhpal Jian, Jinshi Kan, Haiming Kaye, Jason Kominami, Yuji Liang, Naishen Lipson, David Macdonald, Catriona A. Maseyk, Kadmiel Mathes, Kayla Mauritz, Marguerite Mayes, Melanie A. McNulty, Steve Miao, Guofang Migliavacca, Mirco Miller, Scott Miniat, Chelcy F. Nietz, Jennifer G. Nilsson, Mats B. Noormets, Asko Norouzi, Hamidreza O’Connell, Christine S. Osborne, Bruce Oyonarte, Cecilio Pang, Zhuo Peichl, Matthias Pendall, Elise Perez‐Quezada, Jorge F. Phillips, Claire L. Phillips, Richard P. Raich, James W. Renchon, Alexandre A. Ruehr, Nadine K. Sánchez‐Cañete, Enrique P. Saunders, Matthew Savage, Kathleen E. Schrumpf, Marion Scott, Russell L. Seibt, Ulli Silver, Whendee L. Sun, Wu Szutu, Daphne Takagi, Kentaro Takagi, Masahiro Teramoto, Munemasa Tjoelker, Mark G. Trumbore, Susan Ueyama, Masahito Vargas, Rodrigo Varner, Ruth K. Verfaillie, Joseph Vogel, Christoph Wang, Jinsong Winston, Greg Wood, Tana E. Wu, Juying Wutzler, Thomas Zeng, Jiye Zha, Tianshan Zhang, Quan Zou, Junliang |
author_facet | Bond‐Lamberty, Ben Christianson, Danielle S. Malhotra, Avni Pennington, Stephanie C. Sihi, Debjani AghaKouchak, Amir Anjileli, Hassan Altaf Arain, M. Armesto, Juan J. Ashraf, Samaneh Ataka, Mioko Baldocchi, Dennis Andrew Black, Thomas Buchmann, Nina Carbone, Mariah S. Chang, Shih‐Chieh Crill, Patrick Curtis, Peter S. Davidson, Eric A. Desai, Ankur R. Drake, John E. El‐Madany, Tarek S. Gavazzi, Michael Görres, Carolyn‐Monika Gough, Christopher M. Goulden, Michael Gregg, Jillian Gutiérrez del Arroyo, Omar He, Jin‐Sheng Hirano, Takashi Hopple, Anya Hughes, Holly Järveoja, Järvi Jassal, Rachhpal Jian, Jinshi Kan, Haiming Kaye, Jason Kominami, Yuji Liang, Naishen Lipson, David Macdonald, Catriona A. Maseyk, Kadmiel Mathes, Kayla Mauritz, Marguerite Mayes, Melanie A. McNulty, Steve Miao, Guofang Migliavacca, Mirco Miller, Scott Miniat, Chelcy F. Nietz, Jennifer G. Nilsson, Mats B. Noormets, Asko Norouzi, Hamidreza O’Connell, Christine S. Osborne, Bruce Oyonarte, Cecilio Pang, Zhuo Peichl, Matthias Pendall, Elise Perez‐Quezada, Jorge F. Phillips, Claire L. Phillips, Richard P. Raich, James W. Renchon, Alexandre A. Ruehr, Nadine K. Sánchez‐Cañete, Enrique P. Saunders, Matthew Savage, Kathleen E. Schrumpf, Marion Scott, Russell L. Seibt, Ulli Silver, Whendee L. Sun, Wu Szutu, Daphne Takagi, Kentaro Takagi, Masahiro Teramoto, Munemasa Tjoelker, Mark G. Trumbore, Susan Ueyama, Masahito Vargas, Rodrigo Varner, Ruth K. Verfaillie, Joseph Vogel, Christoph Wang, Jinsong Winston, Greg Wood, Tana E. Wu, Juying Wutzler, Thomas Zeng, Jiye Zha, Tianshan Zhang, Quan Zou, Junliang |
author_sort | Bond‐Lamberty, Ben |
collection | PubMed |
description | Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil‐to‐atmosphere CO(2) flux, commonly though imprecisely termed soil respiration (R (S)), is one of the largest carbon fluxes in the Earth system. An increasing number of high‐frequency R (S) measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open‐source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long‐term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measured R (S), the database design accommodates other soil‐atmosphere measurements (e.g. ecosystem respiration, chamber‐measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package. |
format | Online Article Text |
id | pubmed-7756728 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77567282020-12-28 COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data Bond‐Lamberty, Ben Christianson, Danielle S. Malhotra, Avni Pennington, Stephanie C. Sihi, Debjani AghaKouchak, Amir Anjileli, Hassan Altaf Arain, M. Armesto, Juan J. Ashraf, Samaneh Ataka, Mioko Baldocchi, Dennis Andrew Black, Thomas Buchmann, Nina Carbone, Mariah S. Chang, Shih‐Chieh Crill, Patrick Curtis, Peter S. Davidson, Eric A. Desai, Ankur R. Drake, John E. El‐Madany, Tarek S. Gavazzi, Michael Görres, Carolyn‐Monika Gough, Christopher M. Goulden, Michael Gregg, Jillian Gutiérrez del Arroyo, Omar He, Jin‐Sheng Hirano, Takashi Hopple, Anya Hughes, Holly Järveoja, Järvi Jassal, Rachhpal Jian, Jinshi Kan, Haiming Kaye, Jason Kominami, Yuji Liang, Naishen Lipson, David Macdonald, Catriona A. Maseyk, Kadmiel Mathes, Kayla Mauritz, Marguerite Mayes, Melanie A. McNulty, Steve Miao, Guofang Migliavacca, Mirco Miller, Scott Miniat, Chelcy F. Nietz, Jennifer G. Nilsson, Mats B. Noormets, Asko Norouzi, Hamidreza O’Connell, Christine S. Osborne, Bruce Oyonarte, Cecilio Pang, Zhuo Peichl, Matthias Pendall, Elise Perez‐Quezada, Jorge F. Phillips, Claire L. Phillips, Richard P. Raich, James W. Renchon, Alexandre A. Ruehr, Nadine K. Sánchez‐Cañete, Enrique P. Saunders, Matthew Savage, Kathleen E. Schrumpf, Marion Scott, Russell L. Seibt, Ulli Silver, Whendee L. Sun, Wu Szutu, Daphne Takagi, Kentaro Takagi, Masahiro Teramoto, Munemasa Tjoelker, Mark G. Trumbore, Susan Ueyama, Masahito Vargas, Rodrigo Varner, Ruth K. Verfaillie, Joseph Vogel, Christoph Wang, Jinsong Winston, Greg Wood, Tana E. Wu, Juying Wutzler, Thomas Zeng, Jiye Zha, Tianshan Zhang, Quan Zou, Junliang Glob Chang Biol Technical Advance Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil‐to‐atmosphere CO(2) flux, commonly though imprecisely termed soil respiration (R (S)), is one of the largest carbon fluxes in the Earth system. An increasing number of high‐frequency R (S) measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open‐source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long‐term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measured R (S), the database design accommodates other soil‐atmosphere measurements (e.g. ecosystem respiration, chamber‐measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package. John Wiley and Sons Inc. 2020-10-07 2020-12 /pmc/articles/PMC7756728/ /pubmed/33026137 http://dx.doi.org/10.1111/gcb.15353 Text en © 2020 The Authors. Global Change Biology published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Technical Advance Bond‐Lamberty, Ben Christianson, Danielle S. Malhotra, Avni Pennington, Stephanie C. Sihi, Debjani AghaKouchak, Amir Anjileli, Hassan Altaf Arain, M. Armesto, Juan J. Ashraf, Samaneh Ataka, Mioko Baldocchi, Dennis Andrew Black, Thomas Buchmann, Nina Carbone, Mariah S. Chang, Shih‐Chieh Crill, Patrick Curtis, Peter S. Davidson, Eric A. Desai, Ankur R. Drake, John E. El‐Madany, Tarek S. Gavazzi, Michael Görres, Carolyn‐Monika Gough, Christopher M. Goulden, Michael Gregg, Jillian Gutiérrez del Arroyo, Omar He, Jin‐Sheng Hirano, Takashi Hopple, Anya Hughes, Holly Järveoja, Järvi Jassal, Rachhpal Jian, Jinshi Kan, Haiming Kaye, Jason Kominami, Yuji Liang, Naishen Lipson, David Macdonald, Catriona A. Maseyk, Kadmiel Mathes, Kayla Mauritz, Marguerite Mayes, Melanie A. McNulty, Steve Miao, Guofang Migliavacca, Mirco Miller, Scott Miniat, Chelcy F. Nietz, Jennifer G. Nilsson, Mats B. Noormets, Asko Norouzi, Hamidreza O’Connell, Christine S. Osborne, Bruce Oyonarte, Cecilio Pang, Zhuo Peichl, Matthias Pendall, Elise Perez‐Quezada, Jorge F. Phillips, Claire L. Phillips, Richard P. Raich, James W. Renchon, Alexandre A. Ruehr, Nadine K. Sánchez‐Cañete, Enrique P. Saunders, Matthew Savage, Kathleen E. Schrumpf, Marion Scott, Russell L. Seibt, Ulli Silver, Whendee L. Sun, Wu Szutu, Daphne Takagi, Kentaro Takagi, Masahiro Teramoto, Munemasa Tjoelker, Mark G. Trumbore, Susan Ueyama, Masahito Vargas, Rodrigo Varner, Ruth K. Verfaillie, Joseph Vogel, Christoph Wang, Jinsong Winston, Greg Wood, Tana E. Wu, Juying Wutzler, Thomas Zeng, Jiye Zha, Tianshan Zhang, Quan Zou, Junliang COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title | COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title_full | COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title_fullStr | COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title_full_unstemmed | COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title_short | COSORE: A community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
title_sort | cosore: a community database for continuous soil respiration and other soil‐atmosphere greenhouse gas flux data |
topic | Technical Advance |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7756728/ https://www.ncbi.nlm.nih.gov/pubmed/33026137 http://dx.doi.org/10.1111/gcb.15353 |
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