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SMARTS.plus – A Toolbox for Chemical Pattern Design
The number of publications concerning Pan‐Assay Interference Compounds and related problematic structural motifs in screening libraries is constantly growing. In consequence, filter collections are merged, extended but also critically discussed. Due to the complexity of the chemical pattern language...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7757167/ https://www.ncbi.nlm.nih.gov/pubmed/32997890 http://dx.doi.org/10.1002/minf.202000216 |
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author | Ehrt, Christiane Krause, Bennet Schmidt, Robert Ehmki, Emanuel S. R. Rarey, Matthias |
author_facet | Ehrt, Christiane Krause, Bennet Schmidt, Robert Ehmki, Emanuel S. R. Rarey, Matthias |
author_sort | Ehrt, Christiane |
collection | PubMed |
description | The number of publications concerning Pan‐Assay Interference Compounds and related problematic structural motifs in screening libraries is constantly growing. In consequence, filter collections are merged, extended but also critically discussed. Due to the complexity of the chemical pattern language SMARTS, an easy‐to‐use toolbox enabling every chemist to understand, design and modify chemical patterns is urgently needed. Over the past decade, we developed a series of software tools for visualizing, editing, creating, and analysing chemical patterns. Herein, we highlight how most of these tools can now be easily used as part of the novel SMARTS.plus web server (https://smarts.plus/). As a showcase, we demonstrate how researchers can apply the web server tools within minutes to derive novel SMARTS patterns for the filtering of frequent hitters from their screening libraries with only a little experience with the SMARTS language. |
format | Online Article Text |
id | pubmed-7757167 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77571672020-12-28 SMARTS.plus – A Toolbox for Chemical Pattern Design Ehrt, Christiane Krause, Bennet Schmidt, Robert Ehmki, Emanuel S. R. Rarey, Matthias Mol Inform Application Notes The number of publications concerning Pan‐Assay Interference Compounds and related problematic structural motifs in screening libraries is constantly growing. In consequence, filter collections are merged, extended but also critically discussed. Due to the complexity of the chemical pattern language SMARTS, an easy‐to‐use toolbox enabling every chemist to understand, design and modify chemical patterns is urgently needed. Over the past decade, we developed a series of software tools for visualizing, editing, creating, and analysing chemical patterns. Herein, we highlight how most of these tools can now be easily used as part of the novel SMARTS.plus web server (https://smarts.plus/). As a showcase, we demonstrate how researchers can apply the web server tools within minutes to derive novel SMARTS patterns for the filtering of frequent hitters from their screening libraries with only a little experience with the SMARTS language. John Wiley and Sons Inc. 2020-10-08 2020-12 /pmc/articles/PMC7757167/ /pubmed/32997890 http://dx.doi.org/10.1002/minf.202000216 Text en © 2020 The Authors. Published by Wiley-VCH GmbH This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Application Notes Ehrt, Christiane Krause, Bennet Schmidt, Robert Ehmki, Emanuel S. R. Rarey, Matthias SMARTS.plus – A Toolbox for Chemical Pattern Design |
title | SMARTS.plus – A Toolbox for Chemical Pattern Design |
title_full | SMARTS.plus – A Toolbox for Chemical Pattern Design |
title_fullStr | SMARTS.plus – A Toolbox for Chemical Pattern Design |
title_full_unstemmed | SMARTS.plus – A Toolbox for Chemical Pattern Design |
title_short | SMARTS.plus – A Toolbox for Chemical Pattern Design |
title_sort | smarts.plus – a toolbox for chemical pattern design |
topic | Application Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7757167/ https://www.ncbi.nlm.nih.gov/pubmed/32997890 http://dx.doi.org/10.1002/minf.202000216 |
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