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Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing
Pancreatic islets consist of several cell types, including alpha, beta, delta, epsilon, and PP cells. Due to cellular heterogeneity, it is challenging to interpret whole-islet transcriptome data. Single-cell transcriptomics offers a powerful method for investigating gene expression at the single-cel...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7757316/ https://www.ncbi.nlm.nih.gov/pubmed/33377038 http://dx.doi.org/10.1016/j.xpro.2020.100144 |
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author | Lee, Hugo Engin, Feyza |
author_facet | Lee, Hugo Engin, Feyza |
author_sort | Lee, Hugo |
collection | PubMed |
description | Pancreatic islets consist of several cell types, including alpha, beta, delta, epsilon, and PP cells. Due to cellular heterogeneity, it is challenging to interpret whole-islet transcriptome data. Single-cell transcriptomics offers a powerful method for investigating gene expression at the single-cell level and identifying cellular heterogeneity and subpopulations. Here, we describe a protocol for mouse pancreatic islet isolation, culturing, and dissociation into a single-cell suspension. This protocol yields highly viable cells for successful library preparation and single-cell RNA sequencing. For complete details on the use and execution of this protocol, please refer to Lee et al. (2020). |
format | Online Article Text |
id | pubmed-7757316 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-77573162020-12-28 Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing Lee, Hugo Engin, Feyza STAR Protoc Protocol Pancreatic islets consist of several cell types, including alpha, beta, delta, epsilon, and PP cells. Due to cellular heterogeneity, it is challenging to interpret whole-islet transcriptome data. Single-cell transcriptomics offers a powerful method for investigating gene expression at the single-cell level and identifying cellular heterogeneity and subpopulations. Here, we describe a protocol for mouse pancreatic islet isolation, culturing, and dissociation into a single-cell suspension. This protocol yields highly viable cells for successful library preparation and single-cell RNA sequencing. For complete details on the use and execution of this protocol, please refer to Lee et al. (2020). Elsevier 2020-10-20 /pmc/articles/PMC7757316/ /pubmed/33377038 http://dx.doi.org/10.1016/j.xpro.2020.100144 Text en http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Lee, Hugo Engin, Feyza Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title | Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title_full | Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title_fullStr | Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title_full_unstemmed | Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title_short | Preparing Highly Viable Single-Cell Suspensions from Mouse Pancreatic Islets for Single-Cell RNA Sequencing |
title_sort | preparing highly viable single-cell suspensions from mouse pancreatic islets for single-cell rna sequencing |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7757316/ https://www.ncbi.nlm.nih.gov/pubmed/33377038 http://dx.doi.org/10.1016/j.xpro.2020.100144 |
work_keys_str_mv | AT leehugo preparinghighlyviablesinglecellsuspensionsfrommousepancreaticisletsforsinglecellrnasequencing AT enginfeyza preparinghighlyviablesinglecellsuspensionsfrommousepancreaticisletsforsinglecellrnasequencing |