Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods

The common cutworm (CCW, Spodopteraab litura Fabricius) is one of the pests that most severely infect soybean (Glycine max L. Merr.). In a previous report, quantitative trait loci (QTL) analysis of CCW resistance using a recombinant inbred line derived from a cross between a susceptible cultivar ‘Fu...

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Autores principales: Ogiso-Tanaka, Eri, Oki, Nobuhiko, Tanaka, Tsuyoshi, Shimizu, Takehiko, Ishimoto, Masao, Hajika, Makita, Kaga, Akito
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Data Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7758510/
https://www.ncbi.nlm.nih.gov/pubmed/33376760
http://dx.doi.org/10.1016/j.dib.2020.106577
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author Ogiso-Tanaka, Eri
Oki, Nobuhiko
Tanaka, Tsuyoshi
Shimizu, Takehiko
Ishimoto, Masao
Hajika, Makita
Kaga, Akito
author_facet Ogiso-Tanaka, Eri
Oki, Nobuhiko
Tanaka, Tsuyoshi
Shimizu, Takehiko
Ishimoto, Masao
Hajika, Makita
Kaga, Akito
author_sort Ogiso-Tanaka, Eri
collection PubMed
description The common cutworm (CCW, Spodopteraab litura Fabricius) is one of the pests that most severely infect soybean (Glycine max L. Merr.). In a previous report, quantitative trait loci (QTL) analysis of CCW resistance using a recombinant inbred line derived from a cross between a susceptible cultivar ‘Fukuyutaka’ and a resistant cultivar ‘Himeshirazu’, identified two antixenosis resistance QTLs, CCW-1 and CCW-2. To reveal sequence variation between the aforementioned two cultivars, whole genome resequencing was performed using Illumina HiSeq2000 (75,632,747 and 91,540,849 reads). The generated datasets can be used for fine mapping and gene isolation of CCW-1 and CCW-2 as well as for revealing more detailed genetic differences between ‘Fukuyutaka’ and ’Himeshirazu’ .
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spelling pubmed-77585102020-12-28 Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods Ogiso-Tanaka, Eri Oki, Nobuhiko Tanaka, Tsuyoshi Shimizu, Takehiko Ishimoto, Masao Hajika, Makita Kaga, Akito Data Brief Data Article The common cutworm (CCW, Spodopteraab litura Fabricius) is one of the pests that most severely infect soybean (Glycine max L. Merr.). In a previous report, quantitative trait loci (QTL) analysis of CCW resistance using a recombinant inbred line derived from a cross between a susceptible cultivar ‘Fukuyutaka’ and a resistant cultivar ‘Himeshirazu’, identified two antixenosis resistance QTLs, CCW-1 and CCW-2. To reveal sequence variation between the aforementioned two cultivars, whole genome resequencing was performed using Illumina HiSeq2000 (75,632,747 and 91,540,849 reads). The generated datasets can be used for fine mapping and gene isolation of CCW-1 and CCW-2 as well as for revealing more detailed genetic differences between ‘Fukuyutaka’ and ’Himeshirazu’ . Elsevier 2020-12-09 /pmc/articles/PMC7758510/ /pubmed/33376760 http://dx.doi.org/10.1016/j.dib.2020.106577 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Ogiso-Tanaka, Eri
Oki, Nobuhiko
Tanaka, Tsuyoshi
Shimizu, Takehiko
Ishimoto, Masao
Hajika, Makita
Kaga, Akito
Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title_full Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title_fullStr Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title_full_unstemmed Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title_short Characterization of the genomic sequence data around common cutworm resistance genes in soybean (Glycine max) using short- and long-read sequencing methods
title_sort characterization of the genomic sequence data around common cutworm resistance genes in soybean (glycine max) using short- and long-read sequencing methods
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7758510/
https://www.ncbi.nlm.nih.gov/pubmed/33376760
http://dx.doi.org/10.1016/j.dib.2020.106577
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