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Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method

In this study, a one-step isothermal method combining polymerase spiral reaction (PSR) with reverse transcription (RT-PSR) was established for rapid and specific detection of novel astroviruses causing fatal gout in goslings (N-GoAstV). The one-step RT-PSR was accomplished at the optimal temperature...

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Autores principales: Ji, Jun, Chen, Qinxi, Yu, Zhengli, Xu, Xin, Mu, Xinhao, Tian, Xiang, Fu, Xiaoge, Yao, Lunguang, Bi, Yingzuo, Xie, Qingmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7758545/
https://www.ncbi.nlm.nih.gov/pubmed/33363231
http://dx.doi.org/10.3389/fvets.2020.579432
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author Ji, Jun
Chen, Qinxi
Yu, Zhengli
Xu, Xin
Mu, Xinhao
Tian, Xiang
Fu, Xiaoge
Yao, Lunguang
Bi, Yingzuo
Xie, Qingmei
author_facet Ji, Jun
Chen, Qinxi
Yu, Zhengli
Xu, Xin
Mu, Xinhao
Tian, Xiang
Fu, Xiaoge
Yao, Lunguang
Bi, Yingzuo
Xie, Qingmei
author_sort Ji, Jun
collection PubMed
description In this study, a one-step isothermal method combining polymerase spiral reaction (PSR) with reverse transcription (RT-PSR) was established for rapid and specific detection of novel astroviruses causing fatal gout in goslings (N-GoAstV). The one-step RT-PSR was accomplished at the optimal temperature of 62°C and time of 40 min and used primers simply designed as conventional PCR primers, and the results of detection were visible to the naked eye. The detection limit of PSR was above 34.7 copies/μL at a 95% probability level according to probit regression analysis. The assay specifically detected N-GoAstV, and no other reference viruses were detected. These results suggest that the newly established RT-PSR assay could, in one step, accomplish reverse-transcription, amplification, and result determination providing a visible, convenient, rapid, and cost-effective test that can be carried out onsite, in order to ensure timely quarantine of N-GoAstV-infected birds, leading to effective disease control.
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spelling pubmed-77585452020-12-25 Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method Ji, Jun Chen, Qinxi Yu, Zhengli Xu, Xin Mu, Xinhao Tian, Xiang Fu, Xiaoge Yao, Lunguang Bi, Yingzuo Xie, Qingmei Front Vet Sci Veterinary Science In this study, a one-step isothermal method combining polymerase spiral reaction (PSR) with reverse transcription (RT-PSR) was established for rapid and specific detection of novel astroviruses causing fatal gout in goslings (N-GoAstV). The one-step RT-PSR was accomplished at the optimal temperature of 62°C and time of 40 min and used primers simply designed as conventional PCR primers, and the results of detection were visible to the naked eye. The detection limit of PSR was above 34.7 copies/μL at a 95% probability level according to probit regression analysis. The assay specifically detected N-GoAstV, and no other reference viruses were detected. These results suggest that the newly established RT-PSR assay could, in one step, accomplish reverse-transcription, amplification, and result determination providing a visible, convenient, rapid, and cost-effective test that can be carried out onsite, in order to ensure timely quarantine of N-GoAstV-infected birds, leading to effective disease control. Frontiers Media S.A. 2020-12-10 /pmc/articles/PMC7758545/ /pubmed/33363231 http://dx.doi.org/10.3389/fvets.2020.579432 Text en Copyright © 2020 Ji, Chen, Yu, Xu, Mu, Tian, Fu, Yao, Bi and Xie. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Veterinary Science
Ji, Jun
Chen, Qinxi
Yu, Zhengli
Xu, Xin
Mu, Xinhao
Tian, Xiang
Fu, Xiaoge
Yao, Lunguang
Bi, Yingzuo
Xie, Qingmei
Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title_full Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title_fullStr Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title_full_unstemmed Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title_short Simple and Visible Detection of Novel Astroviruses Causing Fatal Gout in Goslings Using One-Step Reverse Transcription Polymerase Spiral Reaction Method
title_sort simple and visible detection of novel astroviruses causing fatal gout in goslings using one-step reverse transcription polymerase spiral reaction method
topic Veterinary Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7758545/
https://www.ncbi.nlm.nih.gov/pubmed/33363231
http://dx.doi.org/10.3389/fvets.2020.579432
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