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The complete chloroplast genome of Stephania tetrandra (Menispermaceae)

The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (...

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Autores principales: Cao, Lan, Mu, Zejing, Sheng, Shasha, Chen, Yuanyuan, Zhong, Guoyue, Du, Xiaolang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759292/
https://www.ncbi.nlm.nih.gov/pubmed/33426289
http://dx.doi.org/10.1080/23802359.2020.1840935
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author Cao, Lan
Mu, Zejing
Sheng, Shasha
Chen, Yuanyuan
Zhong, Guoyue
Du, Xiaolang
author_facet Cao, Lan
Mu, Zejing
Sheng, Shasha
Chen, Yuanyuan
Zhong, Guoyue
Du, Xiaolang
author_sort Cao, Lan
collection PubMed
description The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (IRs) of 24,350 bp. The genome contains 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. Among them, 15 genes have one intron each and three genes contain two introns. The overall GC content is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.8, 32.4, and 43.7%, respectively. Phylogenetic analysis showed that S. tetrandra is more closely related to the clade of two species within Stephania, providing new insight into the evolution of Menispermaceae.
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spelling pubmed-77592922021-01-08 The complete chloroplast genome of Stephania tetrandra (Menispermaceae) Cao, Lan Mu, Zejing Sheng, Shasha Chen, Yuanyuan Zhong, Guoyue Du, Xiaolang Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (IRs) of 24,350 bp. The genome contains 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. Among them, 15 genes have one intron each and three genes contain two introns. The overall GC content is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.8, 32.4, and 43.7%, respectively. Phylogenetic analysis showed that S. tetrandra is more closely related to the clade of two species within Stephania, providing new insight into the evolution of Menispermaceae. Taylor & Francis 2020-12-24 /pmc/articles/PMC7759292/ /pubmed/33426289 http://dx.doi.org/10.1080/23802359.2020.1840935 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Cao, Lan
Mu, Zejing
Sheng, Shasha
Chen, Yuanyuan
Zhong, Guoyue
Du, Xiaolang
The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title_full The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title_fullStr The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title_full_unstemmed The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title_short The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
title_sort complete chloroplast genome of stephania tetrandra (menispermaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759292/
https://www.ncbi.nlm.nih.gov/pubmed/33426289
http://dx.doi.org/10.1080/23802359.2020.1840935
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