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The complete chloroplast genome of Stephania tetrandra (Menispermaceae)
The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759292/ https://www.ncbi.nlm.nih.gov/pubmed/33426289 http://dx.doi.org/10.1080/23802359.2020.1840935 |
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author | Cao, Lan Mu, Zejing Sheng, Shasha Chen, Yuanyuan Zhong, Guoyue Du, Xiaolang |
author_facet | Cao, Lan Mu, Zejing Sheng, Shasha Chen, Yuanyuan Zhong, Guoyue Du, Xiaolang |
author_sort | Cao, Lan |
collection | PubMed |
description | The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (IRs) of 24,350 bp. The genome contains 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. Among them, 15 genes have one intron each and three genes contain two introns. The overall GC content is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.8, 32.4, and 43.7%, respectively. Phylogenetic analysis showed that S. tetrandra is more closely related to the clade of two species within Stephania, providing new insight into the evolution of Menispermaceae. |
format | Online Article Text |
id | pubmed-7759292 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77592922021-01-08 The complete chloroplast genome of Stephania tetrandra (Menispermaceae) Cao, Lan Mu, Zejing Sheng, Shasha Chen, Yuanyuan Zhong, Guoyue Du, Xiaolang Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome of Stephania tetrandra was sequenced and assembled for the first time. The chloroplast genome is 159,974 bp in length, containing a large single-copy (LSC) region of 90,539 bp and a small single-copy region (SSC) of 20,735 bp, separated by a pair of inverted repeats (IRs) of 24,350 bp. The genome contains 113 unique genes, including 79 protein-coding genes (PCGs), 30 tRNA genes, and four rRNA genes. Among them, 15 genes have one intron each and three genes contain two introns. The overall GC content is 37.8%, while the corresponding values of LSC, SSC, and IR regions are 35.8, 32.4, and 43.7%, respectively. Phylogenetic analysis showed that S. tetrandra is more closely related to the clade of two species within Stephania, providing new insight into the evolution of Menispermaceae. Taylor & Francis 2020-12-24 /pmc/articles/PMC7759292/ /pubmed/33426289 http://dx.doi.org/10.1080/23802359.2020.1840935 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Cao, Lan Mu, Zejing Sheng, Shasha Chen, Yuanyuan Zhong, Guoyue Du, Xiaolang The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title | The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title_full | The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title_fullStr | The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title_full_unstemmed | The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title_short | The complete chloroplast genome of Stephania tetrandra (Menispermaceae) |
title_sort | complete chloroplast genome of stephania tetrandra (menispermaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759292/ https://www.ncbi.nlm.nih.gov/pubmed/33426289 http://dx.doi.org/10.1080/23802359.2020.1840935 |
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