Cargando…
Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever an...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759295/ https://www.ncbi.nlm.nih.gov/pubmed/33426299 http://dx.doi.org/10.1080/23802359.2020.1841578 |
_version_ | 1783627093348712448 |
---|---|
author | Li, Peng Yu, Pei Xia, Jin |
author_facet | Li, Peng Yu, Pei Xia, Jin |
author_sort | Li, Peng |
collection | PubMed |
description | Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever and to inhibit the cell growth, cyclooxygenase, and also can anti-inflammatory, anti-allergic, vasodilator, and other effects. Illumina paired-end reads data were used to assemble the complete chloroplast (cp) genome. 16,898,032 raw paired-end reads and the length distribution in 150,602 bp, including a large single-copy (LSC) region of 81,844 bp, a small single-copy (SSC) region of 17,022 bp and a pair of inverted repeats (IRs) of 25,868 bp. Besides, nine protein-coding genes (PCGs) genes and six tRNA genes possess a single intron, while clpP and ycf3 have a couple of introns. Based on the concatenated coding sequences of cp PCGs, the phylogenetic analysis showed that S. dichotoma and Pseudostellaria palibiniana (MK309611) are closely related to each other within the family Caryophyllaceae. |
format | Online Article Text |
id | pubmed-7759295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77592952021-01-08 Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant Li, Peng Yu, Pei Xia, Jin Mitochondrial DNA B Resour Mitogenome Announcement Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever and to inhibit the cell growth, cyclooxygenase, and also can anti-inflammatory, anti-allergic, vasodilator, and other effects. Illumina paired-end reads data were used to assemble the complete chloroplast (cp) genome. 16,898,032 raw paired-end reads and the length distribution in 150,602 bp, including a large single-copy (LSC) region of 81,844 bp, a small single-copy (SSC) region of 17,022 bp and a pair of inverted repeats (IRs) of 25,868 bp. Besides, nine protein-coding genes (PCGs) genes and six tRNA genes possess a single intron, while clpP and ycf3 have a couple of introns. Based on the concatenated coding sequences of cp PCGs, the phylogenetic analysis showed that S. dichotoma and Pseudostellaria palibiniana (MK309611) are closely related to each other within the family Caryophyllaceae. Taylor & Francis 2020-12-24 /pmc/articles/PMC7759295/ /pubmed/33426299 http://dx.doi.org/10.1080/23802359.2020.1841578 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Li, Peng Yu, Pei Xia, Jin Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title | Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title_full | Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title_fullStr | Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title_full_unstemmed | Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title_short | Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant |
title_sort | characterization of the complete chloroplast genome of stellaria dichotoma var. lanceolata bunge, a traditional chinese medicinal plant |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759295/ https://www.ncbi.nlm.nih.gov/pubmed/33426299 http://dx.doi.org/10.1080/23802359.2020.1841578 |
work_keys_str_mv | AT lipeng characterizationofthecompletechloroplastgenomeofstellariadichotomavarlanceolatabungeatraditionalchinesemedicinalplant AT yupei characterizationofthecompletechloroplastgenomeofstellariadichotomavarlanceolatabungeatraditionalchinesemedicinalplant AT xiajin characterizationofthecompletechloroplastgenomeofstellariadichotomavarlanceolatabungeatraditionalchinesemedicinalplant |