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Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant

Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever an...

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Autores principales: Li, Peng, Yu, Pei, Xia, Jin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759295/
https://www.ncbi.nlm.nih.gov/pubmed/33426299
http://dx.doi.org/10.1080/23802359.2020.1841578
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author Li, Peng
Yu, Pei
Xia, Jin
author_facet Li, Peng
Yu, Pei
Xia, Jin
author_sort Li, Peng
collection PubMed
description Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever and to inhibit the cell growth, cyclooxygenase, and also can anti-inflammatory, anti-allergic, vasodilator, and other effects. Illumina paired-end reads data were used to assemble the complete chloroplast (cp) genome. 16,898,032 raw paired-end reads and the length distribution in 150,602 bp, including a large single-copy (LSC) region of 81,844 bp, a small single-copy (SSC) region of 17,022 bp and a pair of inverted repeats (IRs) of 25,868 bp. Besides, nine protein-coding genes (PCGs) genes and six tRNA genes possess a single intron, while clpP and ycf3 have a couple of introns. Based on the concatenated coding sequences of cp PCGs, the phylogenetic analysis showed that S. dichotoma and Pseudostellaria palibiniana (MK309611) are closely related to each other within the family Caryophyllaceae.
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spelling pubmed-77592952021-01-08 Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant Li, Peng Yu, Pei Xia, Jin Mitochondrial DNA B Resour Mitogenome Announcement Stellaria dichotoma var. lanceolata Bunge. is a traditional Chinese medicinal plant of Caryophyllaceae, which contains many chemicals, such as β-carboline alkaloids, sterols, cyclic peptides, phenolic acids, and flavonoids and so on, which was used as folk medicines for antifebrile to treat fever and to inhibit the cell growth, cyclooxygenase, and also can anti-inflammatory, anti-allergic, vasodilator, and other effects. Illumina paired-end reads data were used to assemble the complete chloroplast (cp) genome. 16,898,032 raw paired-end reads and the length distribution in 150,602 bp, including a large single-copy (LSC) region of 81,844 bp, a small single-copy (SSC) region of 17,022 bp and a pair of inverted repeats (IRs) of 25,868 bp. Besides, nine protein-coding genes (PCGs) genes and six tRNA genes possess a single intron, while clpP and ycf3 have a couple of introns. Based on the concatenated coding sequences of cp PCGs, the phylogenetic analysis showed that S. dichotoma and Pseudostellaria palibiniana (MK309611) are closely related to each other within the family Caryophyllaceae. Taylor & Francis 2020-12-24 /pmc/articles/PMC7759295/ /pubmed/33426299 http://dx.doi.org/10.1080/23802359.2020.1841578 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Li, Peng
Yu, Pei
Xia, Jin
Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title_full Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title_fullStr Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title_full_unstemmed Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title_short Characterization of the complete chloroplast genome of Stellaria dichotoma var. lanceolata Bunge, a traditional Chinese medicinal plant
title_sort characterization of the complete chloroplast genome of stellaria dichotoma var. lanceolata bunge, a traditional chinese medicinal plant
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759295/
https://www.ncbi.nlm.nih.gov/pubmed/33426299
http://dx.doi.org/10.1080/23802359.2020.1841578
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