Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)

The complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and tw...

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Autores principales: Tabassum, Nazia, Kim, Yeonghye, Kim, Hyun-Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcements
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759297/
https://www.ncbi.nlm.nih.gov/pubmed/33426287
http://dx.doi.org/10.1080/23802359.2020.1840942
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author Tabassum, Nazia
Kim, Yeonghye
Kim, Hyun-Woo
author_facet Tabassum, Nazia
Kim, Yeonghye
Kim, Hyun-Woo
author_sort Tabassum, Nazia
collection PubMed
description The complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and two non-coding region (the control region and the origin of light-strand replication). Among 13 protein-coding genes, unusual start codon (GTG) was exclusively identified in COX1, while the incomplete stop codons (TA- or T–) were detected in COX2, COX3, ND2, ND3, ND4 and CytB. As a result of phylogenetic tree, S. imberbis formed a cluster of the family Ophidiidae together with Bassozetus zenkevitchi and Lamprogrammus niger.
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spelling pubmed-77592972021-01-08 Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae) Tabassum, Nazia Kim, Yeonghye Kim, Hyun-Woo Mitochondrial DNA B Resour Mitogenome Announcements The complete mitochondrial genome of Sirembo imberbis was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. Total length of the mitogenome was 16,717 bp, which harbors the conserved 13 protein-coding genes (PCGs), 2 ribosomal RNAs (12S and 16S), 22 tRNAs, and two non-coding region (the control region and the origin of light-strand replication). Among 13 protein-coding genes, unusual start codon (GTG) was exclusively identified in COX1, while the incomplete stop codons (TA- or T–) were detected in COX2, COX3, ND2, ND3, ND4 and CytB. As a result of phylogenetic tree, S. imberbis formed a cluster of the family Ophidiidae together with Bassozetus zenkevitchi and Lamprogrammus niger. Taylor & Francis 2020-12-24 /pmc/articles/PMC7759297/ /pubmed/33426287 http://dx.doi.org/10.1080/23802359.2020.1840942 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcements
Tabassum, Nazia
Kim, Yeonghye
Kim, Hyun-Woo
Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title_full Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title_fullStr Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title_full_unstemmed Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title_short Characterization of the complete mitochondrial genome of Golden cusk, Sirembo imberbis (Ophidiiformes:Ophidiidae)
title_sort characterization of the complete mitochondrial genome of golden cusk, sirembo imberbis (ophidiiformes:ophidiidae)
topic Mitogenome Announcements
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7759297/
https://www.ncbi.nlm.nih.gov/pubmed/33426287
http://dx.doi.org/10.1080/23802359.2020.1840942
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