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Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus
Jumbo phages, which have a genome size of more than 200 kb, have recently been reported for the first time. However, limited information is available regarding their characteristics because few jumbo phages have been isolated. Therefore, in this study, we aimed to isolate and characterize other jumb...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7760394/ https://www.ncbi.nlm.nih.gov/pubmed/33266226 http://dx.doi.org/10.3390/v12121373 |
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author | Kim, Sang Guen Lee, Sung Bin Giri, Sib Sankar Kim, Hyoun Joong Kim, Sang Wha Kwon, Jun Park, Jungkum Roh, Eunjung Park, Se Chang |
author_facet | Kim, Sang Guen Lee, Sung Bin Giri, Sib Sankar Kim, Hyoun Joong Kim, Sang Wha Kwon, Jun Park, Jungkum Roh, Eunjung Park, Se Chang |
author_sort | Kim, Sang Guen |
collection | PubMed |
description | Jumbo phages, which have a genome size of more than 200 kb, have recently been reported for the first time. However, limited information is available regarding their characteristics because few jumbo phages have been isolated. Therefore, in this study, we aimed to isolate and characterize other jumbo phages. We performed comparative genomic analysis of three Erwinia phages (pEa_SNUABM_12, pEa_SNUABM_47, and pEa_SNUABM_50), each of which had a genome size of approximately 360 kb (32.5% GC content). These phages were predicted to harbor 546, 540, and 540 open reading frames with 32, 34, and 35 tRNAs, respectively. Almost all of the genes in these phages could not be functionally annotated but showed high sequence similarity with genes encoded in Serratia phage BF, a member of Eneladusvirus. The detailed comparative and phylogenetic analyses presented in this study contribute to our understanding of the diversity and evolution of Erwinia phage and the genus Eneladusvirus. |
format | Online Article Text |
id | pubmed-7760394 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77603942020-12-26 Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus Kim, Sang Guen Lee, Sung Bin Giri, Sib Sankar Kim, Hyoun Joong Kim, Sang Wha Kwon, Jun Park, Jungkum Roh, Eunjung Park, Se Chang Viruses Article Jumbo phages, which have a genome size of more than 200 kb, have recently been reported for the first time. However, limited information is available regarding their characteristics because few jumbo phages have been isolated. Therefore, in this study, we aimed to isolate and characterize other jumbo phages. We performed comparative genomic analysis of three Erwinia phages (pEa_SNUABM_12, pEa_SNUABM_47, and pEa_SNUABM_50), each of which had a genome size of approximately 360 kb (32.5% GC content). These phages were predicted to harbor 546, 540, and 540 open reading frames with 32, 34, and 35 tRNAs, respectively. Almost all of the genes in these phages could not be functionally annotated but showed high sequence similarity with genes encoded in Serratia phage BF, a member of Eneladusvirus. The detailed comparative and phylogenetic analyses presented in this study contribute to our understanding of the diversity and evolution of Erwinia phage and the genus Eneladusvirus. MDPI 2020-11-30 /pmc/articles/PMC7760394/ /pubmed/33266226 http://dx.doi.org/10.3390/v12121373 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kim, Sang Guen Lee, Sung Bin Giri, Sib Sankar Kim, Hyoun Joong Kim, Sang Wha Kwon, Jun Park, Jungkum Roh, Eunjung Park, Se Chang Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title | Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title_full | Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title_fullStr | Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title_full_unstemmed | Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title_short | Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus |
title_sort | characterization of novel erwinia amylovora jumbo bacteriophages from eneladusvirus genus |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7760394/ https://www.ncbi.nlm.nih.gov/pubmed/33266226 http://dx.doi.org/10.3390/v12121373 |
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