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Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy
Background: The aim of this study was to explore the rare variants in a cohort of Romanian index cases with hypertrophic cardiomyopathy (HCM). Methods: Forty-five unrelated probands with HCM were screened by targeted next generation sequencing (NGS) of 47 core and emerging genes connected with HCM....
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7762332/ https://www.ncbi.nlm.nih.gov/pubmed/33297573 http://dx.doi.org/10.3390/diagnostics10121061 |
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author | Micheu, Miruna Mihaela Popa-Fotea, Nicoleta-Monica Oprescu, Nicoleta Bogdan, Stefan Dan, Monica Deaconu, Alexandru Dorobantu, Lucian Gheorghe-Fronea, Oana Greavu, Maria Iorgulescu, Corneliu Scafa-Udriste, Alexandru Ticulescu, Razvan Vatasescu, Radu Gabriel Dorobanțu, Maria |
author_facet | Micheu, Miruna Mihaela Popa-Fotea, Nicoleta-Monica Oprescu, Nicoleta Bogdan, Stefan Dan, Monica Deaconu, Alexandru Dorobantu, Lucian Gheorghe-Fronea, Oana Greavu, Maria Iorgulescu, Corneliu Scafa-Udriste, Alexandru Ticulescu, Razvan Vatasescu, Radu Gabriel Dorobanțu, Maria |
author_sort | Micheu, Miruna Mihaela |
collection | PubMed |
description | Background: The aim of this study was to explore the rare variants in a cohort of Romanian index cases with hypertrophic cardiomyopathy (HCM). Methods: Forty-five unrelated probands with HCM were screened by targeted next generation sequencing (NGS) of 47 core and emerging genes connected with HCM. Results: We identified 95 variants with allele frequency < 0.1% in population databases. MYBPC3 and TTN had the largest number of rare variants (17 variants each). A definite genetic etiology was found in 6 probands (13.3%), while inconclusive results due to either known or novel variants were established in 31 cases (68.9%). All disease-causing variants were detected in sarcomeric genes (MYBPC3 and MYH7 with two cases each, and one case in TNNI3 and TPM1 respectively). Multiple variants were detected in 27 subjects (60%), but no proband carried more than one causal variant. Of note, almost half of the rare variants were novel. Conclusions: Herein we reported for the first time the rare variants identified in core and putative genes associated with HCM in a cohort of Romanian unrelated adult patients. The clinical significance of most detected variants is yet to be established, additional studies based on segregation analysis being required for definite classification. |
format | Online Article Text |
id | pubmed-7762332 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77623322020-12-26 Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy Micheu, Miruna Mihaela Popa-Fotea, Nicoleta-Monica Oprescu, Nicoleta Bogdan, Stefan Dan, Monica Deaconu, Alexandru Dorobantu, Lucian Gheorghe-Fronea, Oana Greavu, Maria Iorgulescu, Corneliu Scafa-Udriste, Alexandru Ticulescu, Razvan Vatasescu, Radu Gabriel Dorobanțu, Maria Diagnostics (Basel) Article Background: The aim of this study was to explore the rare variants in a cohort of Romanian index cases with hypertrophic cardiomyopathy (HCM). Methods: Forty-five unrelated probands with HCM were screened by targeted next generation sequencing (NGS) of 47 core and emerging genes connected with HCM. Results: We identified 95 variants with allele frequency < 0.1% in population databases. MYBPC3 and TTN had the largest number of rare variants (17 variants each). A definite genetic etiology was found in 6 probands (13.3%), while inconclusive results due to either known or novel variants were established in 31 cases (68.9%). All disease-causing variants were detected in sarcomeric genes (MYBPC3 and MYH7 with two cases each, and one case in TNNI3 and TPM1 respectively). Multiple variants were detected in 27 subjects (60%), but no proband carried more than one causal variant. Of note, almost half of the rare variants were novel. Conclusions: Herein we reported for the first time the rare variants identified in core and putative genes associated with HCM in a cohort of Romanian unrelated adult patients. The clinical significance of most detected variants is yet to be established, additional studies based on segregation analysis being required for definite classification. MDPI 2020-12-07 /pmc/articles/PMC7762332/ /pubmed/33297573 http://dx.doi.org/10.3390/diagnostics10121061 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Micheu, Miruna Mihaela Popa-Fotea, Nicoleta-Monica Oprescu, Nicoleta Bogdan, Stefan Dan, Monica Deaconu, Alexandru Dorobantu, Lucian Gheorghe-Fronea, Oana Greavu, Maria Iorgulescu, Corneliu Scafa-Udriste, Alexandru Ticulescu, Razvan Vatasescu, Radu Gabriel Dorobanțu, Maria Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title | Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title_full | Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title_fullStr | Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title_full_unstemmed | Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title_short | Yield of Rare Variants Detected by Targeted Next-Generation Sequencing in a Cohort of Romanian Index Patients with Hypertrophic Cardiomyopathy |
title_sort | yield of rare variants detected by targeted next-generation sequencing in a cohort of romanian index patients with hypertrophic cardiomyopathy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7762332/ https://www.ncbi.nlm.nih.gov/pubmed/33297573 http://dx.doi.org/10.3390/diagnostics10121061 |
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