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Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing

High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure t...

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Autores principales: Luo, Shaobo, Zhang, Yi, Nguyen, Kim Truc, Feng, Shilun, Shi, Yuzhi, Liu, Yang, Hutchinson, Paul, Chierchia, Giovanni, Talbot, Hugues, Bourouina, Tarik, Jiang, Xudong, Liu, Ai Qun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7762436/
https://www.ncbi.nlm.nih.gov/pubmed/33297515
http://dx.doi.org/10.3390/mi11121084
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author Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
author_facet Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
author_sort Luo, Shaobo
collection PubMed
description High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure the averaged size of particles and have difficulties in determining non-spherical particles. Imaging acquisition using camera is capable of observing individual nanoparticles in real time, but the accuracy is compromised by the image defocusing and instrumental calibration. In this work, a machine learning-based pipeline is developed to facilitate a high accuracy imaging-based particle sizing. The pipeline consists of an image segmentation module for cell identification and a machine learning model for accurate pixel-to-size conversion. The results manifest a significantly improved accuracy, showing great potential for a wide range of applications in environmental sensing, biomedical diagnostical, and material characterization.
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spelling pubmed-77624362020-12-26 Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing Luo, Shaobo Zhang, Yi Nguyen, Kim Truc Feng, Shilun Shi, Yuzhi Liu, Yang Hutchinson, Paul Chierchia, Giovanni Talbot, Hugues Bourouina, Tarik Jiang, Xudong Liu, Ai Qun Micromachines (Basel) Article High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure the averaged size of particles and have difficulties in determining non-spherical particles. Imaging acquisition using camera is capable of observing individual nanoparticles in real time, but the accuracy is compromised by the image defocusing and instrumental calibration. In this work, a machine learning-based pipeline is developed to facilitate a high accuracy imaging-based particle sizing. The pipeline consists of an image segmentation module for cell identification and a machine learning model for accurate pixel-to-size conversion. The results manifest a significantly improved accuracy, showing great potential for a wide range of applications in environmental sensing, biomedical diagnostical, and material characterization. MDPI 2020-12-07 /pmc/articles/PMC7762436/ /pubmed/33297515 http://dx.doi.org/10.3390/mi11121084 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Luo, Shaobo
Zhang, Yi
Nguyen, Kim Truc
Feng, Shilun
Shi, Yuzhi
Liu, Yang
Hutchinson, Paul
Chierchia, Giovanni
Talbot, Hugues
Bourouina, Tarik
Jiang, Xudong
Liu, Ai Qun
Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title_full Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title_fullStr Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title_full_unstemmed Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title_short Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing
title_sort machine learning-based pipeline for high accuracy bioparticle sizing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7762436/
https://www.ncbi.nlm.nih.gov/pubmed/33297515
http://dx.doi.org/10.3390/mi11121084
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