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Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers

Movement ecology has traditionally focused on the movements of animals over large time scales, but, with advancements in sensor technology, the focus can become increasingly fine scale. Accelerometers are commonly applied to quantify animal behaviours and can elucidate fine-scale (<2 s) behaviour...

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Autores principales: Kadar, Julianna P., Ladds, Monique A., Day, Joanna, Lyall, Brianne, Brown, Culum
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7763149/
https://www.ncbi.nlm.nih.gov/pubmed/33322308
http://dx.doi.org/10.3390/s20247096
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author Kadar, Julianna P.
Ladds, Monique A.
Day, Joanna
Lyall, Brianne
Brown, Culum
author_facet Kadar, Julianna P.
Ladds, Monique A.
Day, Joanna
Lyall, Brianne
Brown, Culum
author_sort Kadar, Julianna P.
collection PubMed
description Movement ecology has traditionally focused on the movements of animals over large time scales, but, with advancements in sensor technology, the focus can become increasingly fine scale. Accelerometers are commonly applied to quantify animal behaviours and can elucidate fine-scale (<2 s) behaviours. Machine learning methods are commonly applied to animal accelerometry data; however, they require the trial of multiple methods to find an ideal solution. We used tri-axial accelerometers (10 Hz) to quantify four behaviours in Port Jackson sharks (Heterodontus portusjacksoni): two fine-scale behaviours (<2 s)—(1) vertical swimming and (2) chewing as proxy for foraging, and two broad-scale behaviours (>2 s–mins)—(3) resting and (4) swimming. We used validated data to calculate 66 summary statistics from tri-axial accelerometry and assessed the most important features that allowed for differentiation between the behaviours. One and two second epoch testing sets were created consisting of 10 and 20 samples from each behaviour event, respectively. We developed eight machine learning models to assess their overall accuracy and behaviour-specific accuracy (one classification tree, five ensemble learners and two neural networks). The support vector machine model classified the four behaviours better when using the longer 2 s time epoch (F-measure 89%; macro-averaged F-measure: 90%). Here, we show that this support vector machine (SVM) model can reliably classify both fine- and broad-scale behaviours in Port Jackson sharks.
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spelling pubmed-77631492020-12-27 Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers Kadar, Julianna P. Ladds, Monique A. Day, Joanna Lyall, Brianne Brown, Culum Sensors (Basel) Article Movement ecology has traditionally focused on the movements of animals over large time scales, but, with advancements in sensor technology, the focus can become increasingly fine scale. Accelerometers are commonly applied to quantify animal behaviours and can elucidate fine-scale (<2 s) behaviours. Machine learning methods are commonly applied to animal accelerometry data; however, they require the trial of multiple methods to find an ideal solution. We used tri-axial accelerometers (10 Hz) to quantify four behaviours in Port Jackson sharks (Heterodontus portusjacksoni): two fine-scale behaviours (<2 s)—(1) vertical swimming and (2) chewing as proxy for foraging, and two broad-scale behaviours (>2 s–mins)—(3) resting and (4) swimming. We used validated data to calculate 66 summary statistics from tri-axial accelerometry and assessed the most important features that allowed for differentiation between the behaviours. One and two second epoch testing sets were created consisting of 10 and 20 samples from each behaviour event, respectively. We developed eight machine learning models to assess their overall accuracy and behaviour-specific accuracy (one classification tree, five ensemble learners and two neural networks). The support vector machine model classified the four behaviours better when using the longer 2 s time epoch (F-measure 89%; macro-averaged F-measure: 90%). Here, we show that this support vector machine (SVM) model can reliably classify both fine- and broad-scale behaviours in Port Jackson sharks. MDPI 2020-12-11 /pmc/articles/PMC7763149/ /pubmed/33322308 http://dx.doi.org/10.3390/s20247096 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kadar, Julianna P.
Ladds, Monique A.
Day, Joanna
Lyall, Brianne
Brown, Culum
Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title_full Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title_fullStr Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title_full_unstemmed Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title_short Assessment of Machine Learning Models to Identify Port Jackson Shark Behaviours Using Tri-Axial Accelerometers
title_sort assessment of machine learning models to identify port jackson shark behaviours using tri-axial accelerometers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7763149/
https://www.ncbi.nlm.nih.gov/pubmed/33322308
http://dx.doi.org/10.3390/s20247096
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