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Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase
The enzyme model, mouse acetylcholinesterase, which exhibits its active site at the bottom of a narrow gorge, was investigated in the presence of different concentrations of sucrose to shed light on the protein and water dynamics in cholinesterases. The study was conducted by incoherent neutron scat...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7763276/ https://www.ncbi.nlm.nih.gov/pubmed/33322722 http://dx.doi.org/10.3390/biom10121664 |
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author | Lushchekina, Sofya V. Inidjel, Gaetan Martinez, Nicolas Masson, Patrick Trovaslet-Leroy, Marie Nachon, Florian Koza, Michael Marek Seydel, Tilo Peters, Judith |
author_facet | Lushchekina, Sofya V. Inidjel, Gaetan Martinez, Nicolas Masson, Patrick Trovaslet-Leroy, Marie Nachon, Florian Koza, Michael Marek Seydel, Tilo Peters, Judith |
author_sort | Lushchekina, Sofya V. |
collection | PubMed |
description | The enzyme model, mouse acetylcholinesterase, which exhibits its active site at the bottom of a narrow gorge, was investigated in the presence of different concentrations of sucrose to shed light on the protein and water dynamics in cholinesterases. The study was conducted by incoherent neutron scattering, giving access to molecular dynamics within the time scale of sub-nano to nanoseconds, in comparison with molecular dynamics simulations. With increasing sucrose concentration, we found non-linear effects, e.g., first a decrease in the dynamics at 5 wt% followed by a gain at 10 wt% sucrose. Direct comparisons with simulations permitted us to understand the following findings: at 5 wt%, sugar molecules interact with the protein surface through water molecules and damp the motions to reduce the overall protein mobility, although the motions inside the gorge are enhanced due to water depletion. When going to 10 wt% of sucrose, some water molecules at the protein surface are replaced by sugar molecules. By penetrating the protein surface, they disrupt some of the intra-protein contacts, and induce new ones, creating new pathways for correlated motions, and therefore, increasing the dynamics. This exhaustive study allowed for an explanation of the detail interactions leading to the observed non-linear behavior. |
format | Online Article Text |
id | pubmed-7763276 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77632762020-12-27 Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase Lushchekina, Sofya V. Inidjel, Gaetan Martinez, Nicolas Masson, Patrick Trovaslet-Leroy, Marie Nachon, Florian Koza, Michael Marek Seydel, Tilo Peters, Judith Biomolecules Article The enzyme model, mouse acetylcholinesterase, which exhibits its active site at the bottom of a narrow gorge, was investigated in the presence of different concentrations of sucrose to shed light on the protein and water dynamics in cholinesterases. The study was conducted by incoherent neutron scattering, giving access to molecular dynamics within the time scale of sub-nano to nanoseconds, in comparison with molecular dynamics simulations. With increasing sucrose concentration, we found non-linear effects, e.g., first a decrease in the dynamics at 5 wt% followed by a gain at 10 wt% sucrose. Direct comparisons with simulations permitted us to understand the following findings: at 5 wt%, sugar molecules interact with the protein surface through water molecules and damp the motions to reduce the overall protein mobility, although the motions inside the gorge are enhanced due to water depletion. When going to 10 wt% of sucrose, some water molecules at the protein surface are replaced by sugar molecules. By penetrating the protein surface, they disrupt some of the intra-protein contacts, and induce new ones, creating new pathways for correlated motions, and therefore, increasing the dynamics. This exhaustive study allowed for an explanation of the detail interactions leading to the observed non-linear behavior. MDPI 2020-12-12 /pmc/articles/PMC7763276/ /pubmed/33322722 http://dx.doi.org/10.3390/biom10121664 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Lushchekina, Sofya V. Inidjel, Gaetan Martinez, Nicolas Masson, Patrick Trovaslet-Leroy, Marie Nachon, Florian Koza, Michael Marek Seydel, Tilo Peters, Judith Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title | Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title_full | Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title_fullStr | Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title_full_unstemmed | Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title_short | Impact of Sucrose as Osmolyte on Molecular Dynamics of Mouse Acetylcholinesterase |
title_sort | impact of sucrose as osmolyte on molecular dynamics of mouse acetylcholinesterase |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7763276/ https://www.ncbi.nlm.nih.gov/pubmed/33322722 http://dx.doi.org/10.3390/biom10121664 |
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