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Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean

White mold (WM) is a devastating fungal disease affecting common bean (Phaseolus vulgaris L.). In this research, a genome-wide association study (GWAS) for WM resistance was conducted using 294 lines of the Spanish diversity panel. One single-locus method and six multi-locus methods were used in the...

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Autores principales: Campa, Ana, García-Fernández, Carmen, Ferreira, Juan José
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764677/
https://www.ncbi.nlm.nih.gov/pubmed/33322730
http://dx.doi.org/10.3390/genes11121496
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author Campa, Ana
García-Fernández, Carmen
Ferreira, Juan José
author_facet Campa, Ana
García-Fernández, Carmen
Ferreira, Juan José
author_sort Campa, Ana
collection PubMed
description White mold (WM) is a devastating fungal disease affecting common bean (Phaseolus vulgaris L.). In this research, a genome-wide association study (GWAS) for WM resistance was conducted using 294 lines of the Spanish diversity panel. One single-locus method and six multi-locus methods were used in the GWAS. Response to this fungus showed a continuous distribution, and 28 lines were identified as potential resistance sources, including lines of Andean and Mesoamerican origin, as well as intermediate lines between the two gene pools. Twenty-two significant associations were identified, which were organized into 15 quantitative trait intervals (QTIs) located on chromosomes Pv01, Pv02, Pv03, Pv04, Pv08, and Pv09. Seven of these QTIs were identified for the first time, whereas eight corresponded to chromosome regions previously identified in the WM resistance. In all, 468 genes were annotated in these regions, 61 of which were proposed potential candidate genes for WM resistance, based on their function related to the three main defense stages on the host: recognition (22), signal transduction (8), and defense response (31). Results obtained from this work will contribute to a better understanding of the complex quantitative resistance to WM in common bean and reveal information of significance for future breeding programs.
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spelling pubmed-77646772020-12-27 Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean Campa, Ana García-Fernández, Carmen Ferreira, Juan José Genes (Basel) Article White mold (WM) is a devastating fungal disease affecting common bean (Phaseolus vulgaris L.). In this research, a genome-wide association study (GWAS) for WM resistance was conducted using 294 lines of the Spanish diversity panel. One single-locus method and six multi-locus methods were used in the GWAS. Response to this fungus showed a continuous distribution, and 28 lines were identified as potential resistance sources, including lines of Andean and Mesoamerican origin, as well as intermediate lines between the two gene pools. Twenty-two significant associations were identified, which were organized into 15 quantitative trait intervals (QTIs) located on chromosomes Pv01, Pv02, Pv03, Pv04, Pv08, and Pv09. Seven of these QTIs were identified for the first time, whereas eight corresponded to chromosome regions previously identified in the WM resistance. In all, 468 genes were annotated in these regions, 61 of which were proposed potential candidate genes for WM resistance, based on their function related to the three main defense stages on the host: recognition (22), signal transduction (8), and defense response (31). Results obtained from this work will contribute to a better understanding of the complex quantitative resistance to WM in common bean and reveal information of significance for future breeding programs. MDPI 2020-12-12 /pmc/articles/PMC7764677/ /pubmed/33322730 http://dx.doi.org/10.3390/genes11121496 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Campa, Ana
García-Fernández, Carmen
Ferreira, Juan José
Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title_full Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title_fullStr Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title_full_unstemmed Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title_short Genome-Wide Association Study (GWAS) for resistance to Sclerotinia sclerotiorum in Common Bean
title_sort genome-wide association study (gwas) for resistance to sclerotinia sclerotiorum in common bean
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764677/
https://www.ncbi.nlm.nih.gov/pubmed/33322730
http://dx.doi.org/10.3390/genes11121496
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