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Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study

We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based...

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Autores principales: Skoko, Sulejman, Ambrosetti, Matteo, Giovannini, Tommaso, Cappelli, Chiara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764712/
https://www.ncbi.nlm.nih.gov/pubmed/33322361
http://dx.doi.org/10.3390/molecules25245853
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author Skoko, Sulejman
Ambrosetti, Matteo
Giovannini, Tommaso
Cappelli, Chiara
author_facet Skoko, Sulejman
Ambrosetti, Matteo
Giovannini, Tommaso
Cappelli, Chiara
author_sort Skoko, Sulejman
collection PubMed
description We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based on the fluctuating charge (FQ) force field. Such a model is coupled with configurational sampling obtained by performing classical molecular dynamics (MD) simulations. The calculated QM/FQ spectra are compared with the experiments. We show that an accurate reproduction of the UV/Vis spectra of the selected flavonoids can be obtained by appropriately taking into account the role of configurational sampling, polarization, and hydrogen bonding interactions.
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spelling pubmed-77647122020-12-27 Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study Skoko, Sulejman Ambrosetti, Matteo Giovannini, Tommaso Cappelli, Chiara Molecules Article We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based on the fluctuating charge (FQ) force field. Such a model is coupled with configurational sampling obtained by performing classical molecular dynamics (MD) simulations. The calculated QM/FQ spectra are compared with the experiments. We show that an accurate reproduction of the UV/Vis spectra of the selected flavonoids can be obtained by appropriately taking into account the role of configurational sampling, polarization, and hydrogen bonding interactions. MDPI 2020-12-11 /pmc/articles/PMC7764712/ /pubmed/33322361 http://dx.doi.org/10.3390/molecules25245853 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Skoko, Sulejman
Ambrosetti, Matteo
Giovannini, Tommaso
Cappelli, Chiara
Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title_full Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title_fullStr Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title_full_unstemmed Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title_short Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
title_sort simulating absorption spectra of flavonoids in aqueous solution: a polarizable qm/mm study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764712/
https://www.ncbi.nlm.nih.gov/pubmed/33322361
http://dx.doi.org/10.3390/molecules25245853
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