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Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study
We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764712/ https://www.ncbi.nlm.nih.gov/pubmed/33322361 http://dx.doi.org/10.3390/molecules25245853 |
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author | Skoko, Sulejman Ambrosetti, Matteo Giovannini, Tommaso Cappelli, Chiara |
author_facet | Skoko, Sulejman Ambrosetti, Matteo Giovannini, Tommaso Cappelli, Chiara |
author_sort | Skoko, Sulejman |
collection | PubMed |
description | We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based on the fluctuating charge (FQ) force field. Such a model is coupled with configurational sampling obtained by performing classical molecular dynamics (MD) simulations. The calculated QM/FQ spectra are compared with the experiments. We show that an accurate reproduction of the UV/Vis spectra of the selected flavonoids can be obtained by appropriately taking into account the role of configurational sampling, polarization, and hydrogen bonding interactions. |
format | Online Article Text |
id | pubmed-7764712 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77647122020-12-27 Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study Skoko, Sulejman Ambrosetti, Matteo Giovannini, Tommaso Cappelli, Chiara Molecules Article We present a detailed computational study of the UV/Vis spectra of four relevant flavonoids in aqueous solution, namely luteolin, kaempferol, quercetin, and myricetin. The absorption spectra are simulated by exploiting a fully polarizable quantum mechanical (QM)/molecular mechanics (MM) model, based on the fluctuating charge (FQ) force field. Such a model is coupled with configurational sampling obtained by performing classical molecular dynamics (MD) simulations. The calculated QM/FQ spectra are compared with the experiments. We show that an accurate reproduction of the UV/Vis spectra of the selected flavonoids can be obtained by appropriately taking into account the role of configurational sampling, polarization, and hydrogen bonding interactions. MDPI 2020-12-11 /pmc/articles/PMC7764712/ /pubmed/33322361 http://dx.doi.org/10.3390/molecules25245853 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Skoko, Sulejman Ambrosetti, Matteo Giovannini, Tommaso Cappelli, Chiara Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title | Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title_full | Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title_fullStr | Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title_full_unstemmed | Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title_short | Simulating Absorption Spectra of Flavonoids in Aqueous Solution: A Polarizable QM/MM Study |
title_sort | simulating absorption spectra of flavonoids in aqueous solution: a polarizable qm/mm study |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7764712/ https://www.ncbi.nlm.nih.gov/pubmed/33322361 http://dx.doi.org/10.3390/molecules25245853 |
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