Cargando…
A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7765086/ https://www.ncbi.nlm.nih.gov/pubmed/33327598 http://dx.doi.org/10.3390/ma13245701 |
_version_ | 1783628408900550656 |
---|---|
author | Jiang, Zhuoying Hu, Jiajie Marrone, Babetta L. Pilania, Ghanshyam Yu, Xiong (Bill) |
author_facet | Jiang, Zhuoying Hu, Jiajie Marrone, Babetta L. Pilania, Ghanshyam Yu, Xiong (Bill) |
author_sort | Jiang, Zhuoying |
collection | PubMed |
description | The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine learning model was built for predicting the glass transition temperature, T(g), of PHA homo- and copolymers. Molecular fingerprints were used to capture the structural and atomic information of PHA monomers. The other input variables included the molecular weight, the polydispersity index, and the percentage of each monomer in the homo- and copolymers. The results indicate that the DNN model achieves high accuracy in estimation of the glass transition temperature of PHAs. In addition, the symmetry of the DNN model is ensured by incorporating symmetry data in the training process. The DNN model achieved better performance than the support vector machine (SVD), a nonlinear ML model and least absolute shrinkage and selection operator (LASSO), a sparse linear regression model. The relative importance of factors affecting the DNN model prediction were analyzed. Sensitivity of the DNN model, including strategies to deal with missing data, were also investigated. Compared with commonly used machine learning models incorporating quantitative structure–property (QSPR) relationships, it does not require an explicit descriptor selection step but shows a comparable performance. The machine learning model framework can be readily extended to predict other properties. |
format | Online Article Text |
id | pubmed-7765086 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77650862020-12-27 A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers Jiang, Zhuoying Hu, Jiajie Marrone, Babetta L. Pilania, Ghanshyam Yu, Xiong (Bill) Materials (Basel) Article The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine learning model was built for predicting the glass transition temperature, T(g), of PHA homo- and copolymers. Molecular fingerprints were used to capture the structural and atomic information of PHA monomers. The other input variables included the molecular weight, the polydispersity index, and the percentage of each monomer in the homo- and copolymers. The results indicate that the DNN model achieves high accuracy in estimation of the glass transition temperature of PHAs. In addition, the symmetry of the DNN model is ensured by incorporating symmetry data in the training process. The DNN model achieved better performance than the support vector machine (SVD), a nonlinear ML model and least absolute shrinkage and selection operator (LASSO), a sparse linear regression model. The relative importance of factors affecting the DNN model prediction were analyzed. Sensitivity of the DNN model, including strategies to deal with missing data, were also investigated. Compared with commonly used machine learning models incorporating quantitative structure–property (QSPR) relationships, it does not require an explicit descriptor selection step but shows a comparable performance. The machine learning model framework can be readily extended to predict other properties. MDPI 2020-12-14 /pmc/articles/PMC7765086/ /pubmed/33327598 http://dx.doi.org/10.3390/ma13245701 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jiang, Zhuoying Hu, Jiajie Marrone, Babetta L. Pilania, Ghanshyam Yu, Xiong (Bill) A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title | A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title_full | A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title_fullStr | A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title_full_unstemmed | A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title_short | A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers |
title_sort | deep neural network for accurate and robust prediction of the glass transition temperature of polyhydroxyalkanoate homo- and copolymers |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7765086/ https://www.ncbi.nlm.nih.gov/pubmed/33327598 http://dx.doi.org/10.3390/ma13245701 |
work_keys_str_mv | AT jiangzhuoying adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT hujiajie adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT marronebabettal adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT pilaniaghanshyam adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT yuxiongbill adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT jiangzhuoying deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT hujiajie deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT marronebabettal deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT pilaniaghanshyam deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers AT yuxiongbill deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers |