Cargando…

A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers

The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine...

Descripción completa

Detalles Bibliográficos
Autores principales: Jiang, Zhuoying, Hu, Jiajie, Marrone, Babetta L., Pilania, Ghanshyam, Yu, Xiong (Bill)
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7765086/
https://www.ncbi.nlm.nih.gov/pubmed/33327598
http://dx.doi.org/10.3390/ma13245701
_version_ 1783628408900550656
author Jiang, Zhuoying
Hu, Jiajie
Marrone, Babetta L.
Pilania, Ghanshyam
Yu, Xiong (Bill)
author_facet Jiang, Zhuoying
Hu, Jiajie
Marrone, Babetta L.
Pilania, Ghanshyam
Yu, Xiong (Bill)
author_sort Jiang, Zhuoying
collection PubMed
description The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine learning model was built for predicting the glass transition temperature, T(g), of PHA homo- and copolymers. Molecular fingerprints were used to capture the structural and atomic information of PHA monomers. The other input variables included the molecular weight, the polydispersity index, and the percentage of each monomer in the homo- and copolymers. The results indicate that the DNN model achieves high accuracy in estimation of the glass transition temperature of PHAs. In addition, the symmetry of the DNN model is ensured by incorporating symmetry data in the training process. The DNN model achieved better performance than the support vector machine (SVD), a nonlinear ML model and least absolute shrinkage and selection operator (LASSO), a sparse linear regression model. The relative importance of factors affecting the DNN model prediction were analyzed. Sensitivity of the DNN model, including strategies to deal with missing data, were also investigated. Compared with commonly used machine learning models incorporating quantitative structure–property (QSPR) relationships, it does not require an explicit descriptor selection step but shows a comparable performance. The machine learning model framework can be readily extended to predict other properties.
format Online
Article
Text
id pubmed-7765086
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-77650862020-12-27 A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers Jiang, Zhuoying Hu, Jiajie Marrone, Babetta L. Pilania, Ghanshyam Yu, Xiong (Bill) Materials (Basel) Article The purpose of this study was to develop a data-driven machine learning model to predict the performance properties of polyhydroxyalkanoates (PHAs), a group of biosourced polyesters featuring excellent performance, to guide future design and synthesis experiments. A deep neural network (DNN) machine learning model was built for predicting the glass transition temperature, T(g), of PHA homo- and copolymers. Molecular fingerprints were used to capture the structural and atomic information of PHA monomers. The other input variables included the molecular weight, the polydispersity index, and the percentage of each monomer in the homo- and copolymers. The results indicate that the DNN model achieves high accuracy in estimation of the glass transition temperature of PHAs. In addition, the symmetry of the DNN model is ensured by incorporating symmetry data in the training process. The DNN model achieved better performance than the support vector machine (SVD), a nonlinear ML model and least absolute shrinkage and selection operator (LASSO), a sparse linear regression model. The relative importance of factors affecting the DNN model prediction were analyzed. Sensitivity of the DNN model, including strategies to deal with missing data, were also investigated. Compared with commonly used machine learning models incorporating quantitative structure–property (QSPR) relationships, it does not require an explicit descriptor selection step but shows a comparable performance. The machine learning model framework can be readily extended to predict other properties. MDPI 2020-12-14 /pmc/articles/PMC7765086/ /pubmed/33327598 http://dx.doi.org/10.3390/ma13245701 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Jiang, Zhuoying
Hu, Jiajie
Marrone, Babetta L.
Pilania, Ghanshyam
Yu, Xiong (Bill)
A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title_full A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title_fullStr A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title_full_unstemmed A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title_short A Deep Neural Network for Accurate and Robust Prediction of the Glass Transition Temperature of Polyhydroxyalkanoate Homo- and Copolymers
title_sort deep neural network for accurate and robust prediction of the glass transition temperature of polyhydroxyalkanoate homo- and copolymers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7765086/
https://www.ncbi.nlm.nih.gov/pubmed/33327598
http://dx.doi.org/10.3390/ma13245701
work_keys_str_mv AT jiangzhuoying adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT hujiajie adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT marronebabettal adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT pilaniaghanshyam adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT yuxiongbill adeepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT jiangzhuoying deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT hujiajie deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT marronebabettal deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT pilaniaghanshyam deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers
AT yuxiongbill deepneuralnetworkforaccurateandrobustpredictionoftheglasstransitiontemperatureofpolyhydroxyalkanoatehomoandcopolymers