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OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma

Myxofibrosarcoma is a complex genetic disease with poor prognosis. However, more effective biomarkers that forebode poor prognosis in Myxofibrosarcoma remain to be determined. Herein, utilizing gene expression profiling data and clinical follow-up data of Myxofibrosarcoma cases in three independent...

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Detalles Bibliográficos
Autores principales: Li, Huimin, Xie, Longxiang, Wang, Qiang, Dang, Yifang, Sun, Xiaoxiao, Zhang, Lu, Han, Yali, Yan, Zhongyi, Dong, Huan, Zheng, Hong, Li, Yongqiang, Zhu, Wan, Guo, Xiangqian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7766036/
https://www.ncbi.nlm.nih.gov/pubmed/33352742
http://dx.doi.org/10.3390/genes11121523
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author Li, Huimin
Xie, Longxiang
Wang, Qiang
Dang, Yifang
Sun, Xiaoxiao
Zhang, Lu
Han, Yali
Yan, Zhongyi
Dong, Huan
Zheng, Hong
Li, Yongqiang
Zhu, Wan
Guo, Xiangqian
author_facet Li, Huimin
Xie, Longxiang
Wang, Qiang
Dang, Yifang
Sun, Xiaoxiao
Zhang, Lu
Han, Yali
Yan, Zhongyi
Dong, Huan
Zheng, Hong
Li, Yongqiang
Zhu, Wan
Guo, Xiangqian
author_sort Li, Huimin
collection PubMed
description Myxofibrosarcoma is a complex genetic disease with poor prognosis. However, more effective biomarkers that forebode poor prognosis in Myxofibrosarcoma remain to be determined. Herein, utilizing gene expression profiling data and clinical follow-up data of Myxofibrosarcoma cases in three independent cohorts with a total of 128 Myxofibrosarcoma samples from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, we constructed an easy-to-use web tool, named Online consensus Survival analysis for Myxofibrosarcoma (OSmfs) to analyze the prognostic value of certain genes. Through retrieving the database, users generate a Kaplan–Meier plot with log-rank test and hazard ratio (HR) to assess prognostic-related genes or discover novel Myxofibrosarcoma prognostic biomarkers. The effectiveness and availability of OSmfs were validated using genes in ever reports predicting the prognosis of Myxofibrosarcoma patients. Furthermore, utilizing the cox analysis data and transcriptome data establishing OSmfs, seven genes were selected and considered as more potentially prognostic biomarkers through overlapping and ROC analysis. In conclusion, OSmfs is a promising web tool to evaluate the prognostic potency and reliability of genes in Myxofibrosarcoma, which may significantly contribute to the enrichment of novelly potential prognostic biomarkers and therapeutic targets for Myxofibrosarcoma.
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spelling pubmed-77660362020-12-28 OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma Li, Huimin Xie, Longxiang Wang, Qiang Dang, Yifang Sun, Xiaoxiao Zhang, Lu Han, Yali Yan, Zhongyi Dong, Huan Zheng, Hong Li, Yongqiang Zhu, Wan Guo, Xiangqian Genes (Basel) Article Myxofibrosarcoma is a complex genetic disease with poor prognosis. However, more effective biomarkers that forebode poor prognosis in Myxofibrosarcoma remain to be determined. Herein, utilizing gene expression profiling data and clinical follow-up data of Myxofibrosarcoma cases in three independent cohorts with a total of 128 Myxofibrosarcoma samples from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, we constructed an easy-to-use web tool, named Online consensus Survival analysis for Myxofibrosarcoma (OSmfs) to analyze the prognostic value of certain genes. Through retrieving the database, users generate a Kaplan–Meier plot with log-rank test and hazard ratio (HR) to assess prognostic-related genes or discover novel Myxofibrosarcoma prognostic biomarkers. The effectiveness and availability of OSmfs were validated using genes in ever reports predicting the prognosis of Myxofibrosarcoma patients. Furthermore, utilizing the cox analysis data and transcriptome data establishing OSmfs, seven genes were selected and considered as more potentially prognostic biomarkers through overlapping and ROC analysis. In conclusion, OSmfs is a promising web tool to evaluate the prognostic potency and reliability of genes in Myxofibrosarcoma, which may significantly contribute to the enrichment of novelly potential prognostic biomarkers and therapeutic targets for Myxofibrosarcoma. MDPI 2020-12-19 /pmc/articles/PMC7766036/ /pubmed/33352742 http://dx.doi.org/10.3390/genes11121523 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Li, Huimin
Xie, Longxiang
Wang, Qiang
Dang, Yifang
Sun, Xiaoxiao
Zhang, Lu
Han, Yali
Yan, Zhongyi
Dong, Huan
Zheng, Hong
Li, Yongqiang
Zhu, Wan
Guo, Xiangqian
OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title_full OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title_fullStr OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title_full_unstemmed OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title_short OSmfs: An Online Interactive Tool to Evaluate Prognostic Markers for Myxofibrosarcoma
title_sort osmfs: an online interactive tool to evaluate prognostic markers for myxofibrosarcoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7766036/
https://www.ncbi.nlm.nih.gov/pubmed/33352742
http://dx.doi.org/10.3390/genes11121523
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