Cargando…

Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies

The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parame...

Descripción completa

Detalles Bibliográficos
Autores principales: Al-Zaqri, Nabil, Suleiman, Mohammed, Al-Ali, Anas, Alkanad, Khaled, Kumara, Karthik, Lokanath, Neartur K., Zarrouk, Abdelkader, Alsalme, Ali, Alharthi, Fahad A., Al-Taleb, Afnan, Alsyahi, Amjad, Warad, Ismail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767059/
https://www.ncbi.nlm.nih.gov/pubmed/33339423
http://dx.doi.org/10.3390/molecules25245970
_version_ 1783628867444932608
author Al-Zaqri, Nabil
Suleiman, Mohammed
Al-Ali, Anas
Alkanad, Khaled
Kumara, Karthik
Lokanath, Neartur K.
Zarrouk, Abdelkader
Alsalme, Ali
Alharthi, Fahad A.
Al-Taleb, Afnan
Alsyahi, Amjad
Warad, Ismail
author_facet Al-Zaqri, Nabil
Suleiman, Mohammed
Al-Ali, Anas
Alkanad, Khaled
Kumara, Karthik
Lokanath, Neartur K.
Zarrouk, Abdelkader
Alsalme, Ali
Alharthi, Fahad A.
Al-Taleb, Afnan
Alsyahi, Amjad
Warad, Ismail
author_sort Al-Zaqri, Nabil
collection PubMed
description The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parameters results were matched with the X-ray diffraction (XRD) crystallographic parameters. XRD analysis showed that the exo-isomer was structurally favored and was also considered as the kinetically preferred isomer, while several hydrogen-bonding interactions detected in the crystal lattice by XRD were in good agreement with the Hirshfeld surface analysis calculations. The molecular electrostatic potential, Mulliken and natural population analysis charges, frontier molecular orbitals (HOMO/LUMO), and global reactivity descriptors quantum parameters were also determined at the B3LYP/6-311G(d,p) level of theory. The computed electronic calculations, i.e., TD-SCF/DFT, B3LYP-IR, NMR-DB, and GIAO-NMR, were compared to the experimental UV–Vis., optical energy gap, FTIR, and (1)H-NMR, respectively. The thermal behavior of 2,5-dimethoxybenzaldehyde was also evaluated in an open atmosphere by a thermogravimetric–derivative thermogravimetric analysis, indicating its stability up to 95 °C.
format Online
Article
Text
id pubmed-7767059
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-77670592020-12-28 Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies Al-Zaqri, Nabil Suleiman, Mohammed Al-Ali, Anas Alkanad, Khaled Kumara, Karthik Lokanath, Neartur K. Zarrouk, Abdelkader Alsalme, Ali Alharthi, Fahad A. Al-Taleb, Afnan Alsyahi, Amjad Warad, Ismail Molecules Article The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parameters results were matched with the X-ray diffraction (XRD) crystallographic parameters. XRD analysis showed that the exo-isomer was structurally favored and was also considered as the kinetically preferred isomer, while several hydrogen-bonding interactions detected in the crystal lattice by XRD were in good agreement with the Hirshfeld surface analysis calculations. The molecular electrostatic potential, Mulliken and natural population analysis charges, frontier molecular orbitals (HOMO/LUMO), and global reactivity descriptors quantum parameters were also determined at the B3LYP/6-311G(d,p) level of theory. The computed electronic calculations, i.e., TD-SCF/DFT, B3LYP-IR, NMR-DB, and GIAO-NMR, were compared to the experimental UV–Vis., optical energy gap, FTIR, and (1)H-NMR, respectively. The thermal behavior of 2,5-dimethoxybenzaldehyde was also evaluated in an open atmosphere by a thermogravimetric–derivative thermogravimetric analysis, indicating its stability up to 95 °C. MDPI 2020-12-16 /pmc/articles/PMC7767059/ /pubmed/33339423 http://dx.doi.org/10.3390/molecules25245970 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Al-Zaqri, Nabil
Suleiman, Mohammed
Al-Ali, Anas
Alkanad, Khaled
Kumara, Karthik
Lokanath, Neartur K.
Zarrouk, Abdelkader
Alsalme, Ali
Alharthi, Fahad A.
Al-Taleb, Afnan
Alsyahi, Amjad
Warad, Ismail
Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title_full Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title_fullStr Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title_full_unstemmed Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title_short Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
title_sort exo⇔endo isomerism, mep/dft, xrd/hsa-interactions of 2,5-dimethoxybenzaldehyde: thermal, 1bna-docking, optical, and td-dft studies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767059/
https://www.ncbi.nlm.nih.gov/pubmed/33339423
http://dx.doi.org/10.3390/molecules25245970
work_keys_str_mv AT alzaqrinabil exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT suleimanmohammed exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT alalianas exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT alkanadkhaled exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT kumarakarthik exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT lokanathnearturk exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT zarroukabdelkader exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT alsalmeali exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT alharthifahada exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT altalebafnan exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT alsyahiamjad exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies
AT waradismail exoendoisomerismmepdftxrdhsainteractionsof25dimethoxybenzaldehydethermal1bnadockingopticalandtddftstudies