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Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies
The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parame...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767059/ https://www.ncbi.nlm.nih.gov/pubmed/33339423 http://dx.doi.org/10.3390/molecules25245970 |
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author | Al-Zaqri, Nabil Suleiman, Mohammed Al-Ali, Anas Alkanad, Khaled Kumara, Karthik Lokanath, Neartur K. Zarrouk, Abdelkader Alsalme, Ali Alharthi, Fahad A. Al-Taleb, Afnan Alsyahi, Amjad Warad, Ismail |
author_facet | Al-Zaqri, Nabil Suleiman, Mohammed Al-Ali, Anas Alkanad, Khaled Kumara, Karthik Lokanath, Neartur K. Zarrouk, Abdelkader Alsalme, Ali Alharthi, Fahad A. Al-Taleb, Afnan Alsyahi, Amjad Warad, Ismail |
author_sort | Al-Zaqri, Nabil |
collection | PubMed |
description | The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parameters results were matched with the X-ray diffraction (XRD) crystallographic parameters. XRD analysis showed that the exo-isomer was structurally favored and was also considered as the kinetically preferred isomer, while several hydrogen-bonding interactions detected in the crystal lattice by XRD were in good agreement with the Hirshfeld surface analysis calculations. The molecular electrostatic potential, Mulliken and natural population analysis charges, frontier molecular orbitals (HOMO/LUMO), and global reactivity descriptors quantum parameters were also determined at the B3LYP/6-311G(d,p) level of theory. The computed electronic calculations, i.e., TD-SCF/DFT, B3LYP-IR, NMR-DB, and GIAO-NMR, were compared to the experimental UV–Vis., optical energy gap, FTIR, and (1)H-NMR, respectively. The thermal behavior of 2,5-dimethoxybenzaldehyde was also evaluated in an open atmosphere by a thermogravimetric–derivative thermogravimetric analysis, indicating its stability up to 95 °C. |
format | Online Article Text |
id | pubmed-7767059 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77670592020-12-28 Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies Al-Zaqri, Nabil Suleiman, Mohammed Al-Ali, Anas Alkanad, Khaled Kumara, Karthik Lokanath, Neartur K. Zarrouk, Abdelkader Alsalme, Ali Alharthi, Fahad A. Al-Taleb, Afnan Alsyahi, Amjad Warad, Ismail Molecules Article The exo⇔endo isomerization of 2,5-dimethoxybenzaldehyde was theoretically studied by density functional theory (DFT) to examine its favored conformers via sp(2)–sp(2) single rotation. Both isomers were docked against 1BNA DNA to elucidate their binding ability, and the DFT-computed structural parameters results were matched with the X-ray diffraction (XRD) crystallographic parameters. XRD analysis showed that the exo-isomer was structurally favored and was also considered as the kinetically preferred isomer, while several hydrogen-bonding interactions detected in the crystal lattice by XRD were in good agreement with the Hirshfeld surface analysis calculations. The molecular electrostatic potential, Mulliken and natural population analysis charges, frontier molecular orbitals (HOMO/LUMO), and global reactivity descriptors quantum parameters were also determined at the B3LYP/6-311G(d,p) level of theory. The computed electronic calculations, i.e., TD-SCF/DFT, B3LYP-IR, NMR-DB, and GIAO-NMR, were compared to the experimental UV–Vis., optical energy gap, FTIR, and (1)H-NMR, respectively. The thermal behavior of 2,5-dimethoxybenzaldehyde was also evaluated in an open atmosphere by a thermogravimetric–derivative thermogravimetric analysis, indicating its stability up to 95 °C. MDPI 2020-12-16 /pmc/articles/PMC7767059/ /pubmed/33339423 http://dx.doi.org/10.3390/molecules25245970 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Al-Zaqri, Nabil Suleiman, Mohammed Al-Ali, Anas Alkanad, Khaled Kumara, Karthik Lokanath, Neartur K. Zarrouk, Abdelkader Alsalme, Ali Alharthi, Fahad A. Al-Taleb, Afnan Alsyahi, Amjad Warad, Ismail Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title | Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title_full | Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title_fullStr | Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title_full_unstemmed | Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title_short | Exo⇔Endo Isomerism, MEP/DFT, XRD/HSA-Interactions of 2,5-Dimethoxybenzaldehyde: Thermal, 1BNA-Docking, Optical, and TD-DFT Studies |
title_sort | exo⇔endo isomerism, mep/dft, xrd/hsa-interactions of 2,5-dimethoxybenzaldehyde: thermal, 1bna-docking, optical, and td-dft studies |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767059/ https://www.ncbi.nlm.nih.gov/pubmed/33339423 http://dx.doi.org/10.3390/molecules25245970 |
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