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Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs
BACKGROUND: Microsatellites or short tandem repeats (STRs) are considered the gold standard for forensic investigations and autosomal STRs are used for routine forensic personal identification. AIM: To provide a precise population database on an extended set of STRs which has never been done before...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767539/ https://www.ncbi.nlm.nih.gov/pubmed/32996279 http://dx.doi.org/10.1002/mgg3.1517 |
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author | Du, Jiang Diao, Yefang Rakha, Allah Ameen, Fuad AlKahtani, Muneera D. F. Adnan, Atif |
author_facet | Du, Jiang Diao, Yefang Rakha, Allah Ameen, Fuad AlKahtani, Muneera D. F. Adnan, Atif |
author_sort | Du, Jiang |
collection | PubMed |
description | BACKGROUND: Microsatellites or short tandem repeats (STRs) are considered the gold standard for forensic investigations and autosomal STRs are used for routine forensic personal identification. AIM: To provide a precise population database on an extended set of STRs which has never been done before and explore the forensic characteristics of 20 autosomal STRs. SUBJECTS AND METHODS: In the current study, we explored the genetic characteristics of 20 STRs loci in 1138 unrelated Han individuals using Goldeneye(®) 20A multiplex amplification system kit in the Liaoning Han population. Additionally, phylogenetic analysis based on the Nei's standard genetic distance was performed between the Han population and other relevant populations. RESULTS: A total of 253 alleles were observed while allelic frequencies ranged from 0.00043 to 0.5369. The combined discrimination power was 99.99999999999999999999789% and the combined exclusion power was 99.999998231%. Most of the loci were in HWE while only five pairs were out of LE. Population genetic analysis showed that the Han population has similarities with other East Asian populations. CONCLUSION: GoldenEye(TM) 20A kit detects high diversity in the Liaoning Han population. These STRs which are part of this kit can be used for forensic investigations. Population genetic analysis showed that the Han population is different from the minority populations of Xinjiang. |
format | Online Article Text |
id | pubmed-7767539 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77675392020-12-28 Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs Du, Jiang Diao, Yefang Rakha, Allah Ameen, Fuad AlKahtani, Muneera D. F. Adnan, Atif Mol Genet Genomic Med Original Articles BACKGROUND: Microsatellites or short tandem repeats (STRs) are considered the gold standard for forensic investigations and autosomal STRs are used for routine forensic personal identification. AIM: To provide a precise population database on an extended set of STRs which has never been done before and explore the forensic characteristics of 20 autosomal STRs. SUBJECTS AND METHODS: In the current study, we explored the genetic characteristics of 20 STRs loci in 1138 unrelated Han individuals using Goldeneye(®) 20A multiplex amplification system kit in the Liaoning Han population. Additionally, phylogenetic analysis based on the Nei's standard genetic distance was performed between the Han population and other relevant populations. RESULTS: A total of 253 alleles were observed while allelic frequencies ranged from 0.00043 to 0.5369. The combined discrimination power was 99.99999999999999999999789% and the combined exclusion power was 99.999998231%. Most of the loci were in HWE while only five pairs were out of LE. Population genetic analysis showed that the Han population has similarities with other East Asian populations. CONCLUSION: GoldenEye(TM) 20A kit detects high diversity in the Liaoning Han population. These STRs which are part of this kit can be used for forensic investigations. Population genetic analysis showed that the Han population is different from the minority populations of Xinjiang. John Wiley and Sons Inc. 2020-09-29 /pmc/articles/PMC7767539/ /pubmed/32996279 http://dx.doi.org/10.1002/mgg3.1517 Text en © 2020 The Authors. Molecular Genetics & Genomic Medicine published by Wiley Periodicals LLC. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Du, Jiang Diao, Yefang Rakha, Allah Ameen, Fuad AlKahtani, Muneera D. F. Adnan, Atif Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title | Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title_full | Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title_fullStr | Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title_full_unstemmed | Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title_short | Forensic applications and genetic characterization of Liaoning Han population revealed by extended set of autosomal STRs |
title_sort | forensic applications and genetic characterization of liaoning han population revealed by extended set of autosomal strs |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767539/ https://www.ncbi.nlm.nih.gov/pubmed/32996279 http://dx.doi.org/10.1002/mgg3.1517 |
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