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Determining the seasonality of respiratory syncytial virus in Slovenia

BACKGROUND: In Slovenia, the respiratory syncytial virus (RSV) surveillance is based on national laboratory data. The weeks with more than 10% of samples tested positive compose RSV epidemic season. The use of real‐time multiplex PCR, which identifies other respiratory pathogens in parallel with RSV...

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Autores principales: Grilc, Eva, Prosenc Trilar, Katarina, Lajovic, Jaro, Sočan, Maja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767947/
https://www.ncbi.nlm.nih.gov/pubmed/32656961
http://dx.doi.org/10.1111/irv.12779
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author Grilc, Eva
Prosenc Trilar, Katarina
Lajovic, Jaro
Sočan, Maja
author_facet Grilc, Eva
Prosenc Trilar, Katarina
Lajovic, Jaro
Sočan, Maja
author_sort Grilc, Eva
collection PubMed
description BACKGROUND: In Slovenia, the respiratory syncytial virus (RSV) surveillance is based on national laboratory data. The weeks with more than 10% of samples tested positive compose RSV epidemic season. The use of real‐time multiplex PCR, which identifies other respiratory pathogens in parallel with RSV, caused more testing but the percentage of RSV positives lowered. The 10% threshold was reached with delay, which raised concern about its suitability for defining RSV seasonality. METHODS: To describe the seasonality of RSV, the onset, offset and duration of the RSV epidemic season across 10 years (from week 40, 2008/2009 to week 39, 2017/2018), four calculative methods were deployed including moving epidemic method, MEM, and epidemiological parameters were compared. RESULTS: In 10 years, 10 969 (12%) out of 90 264 samples tested positive for RSV. The number of tested samples increased remarkably from the first to last season with a drop in the percentage of positive samples from 23% to 10%. The onset of RSV epidemic varied considerably regardless of the calculative method used (from 10 to 13 weeks). The unevenness in the RSV epidemic season end was also observed. The average duration of RSV epidemic season was the shortest when moving epidemic method has been used (15.7 weeks) and longest with ≥3% method (22.9 weeks). CONCLUSION: The ≥3% calculative method could be used as an early warning of the RSV season. However, ≥7% calculative method was found to be reliable enough to define the epidemiological parameters of an ongoing season and to support public health response. The potential of the moving epidemic method should be further explored.
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spelling pubmed-77679472021-01-01 Determining the seasonality of respiratory syncytial virus in Slovenia Grilc, Eva Prosenc Trilar, Katarina Lajovic, Jaro Sočan, Maja Influenza Other Respir Viruses Original Articles BACKGROUND: In Slovenia, the respiratory syncytial virus (RSV) surveillance is based on national laboratory data. The weeks with more than 10% of samples tested positive compose RSV epidemic season. The use of real‐time multiplex PCR, which identifies other respiratory pathogens in parallel with RSV, caused more testing but the percentage of RSV positives lowered. The 10% threshold was reached with delay, which raised concern about its suitability for defining RSV seasonality. METHODS: To describe the seasonality of RSV, the onset, offset and duration of the RSV epidemic season across 10 years (from week 40, 2008/2009 to week 39, 2017/2018), four calculative methods were deployed including moving epidemic method, MEM, and epidemiological parameters were compared. RESULTS: In 10 years, 10 969 (12%) out of 90 264 samples tested positive for RSV. The number of tested samples increased remarkably from the first to last season with a drop in the percentage of positive samples from 23% to 10%. The onset of RSV epidemic varied considerably regardless of the calculative method used (from 10 to 13 weeks). The unevenness in the RSV epidemic season end was also observed. The average duration of RSV epidemic season was the shortest when moving epidemic method has been used (15.7 weeks) and longest with ≥3% method (22.9 weeks). CONCLUSION: The ≥3% calculative method could be used as an early warning of the RSV season. However, ≥7% calculative method was found to be reliable enough to define the epidemiological parameters of an ongoing season and to support public health response. The potential of the moving epidemic method should be further explored. John Wiley and Sons Inc. 2020-07-12 2021-01 /pmc/articles/PMC7767947/ /pubmed/32656961 http://dx.doi.org/10.1111/irv.12779 Text en © 2020 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Grilc, Eva
Prosenc Trilar, Katarina
Lajovic, Jaro
Sočan, Maja
Determining the seasonality of respiratory syncytial virus in Slovenia
title Determining the seasonality of respiratory syncytial virus in Slovenia
title_full Determining the seasonality of respiratory syncytial virus in Slovenia
title_fullStr Determining the seasonality of respiratory syncytial virus in Slovenia
title_full_unstemmed Determining the seasonality of respiratory syncytial virus in Slovenia
title_short Determining the seasonality of respiratory syncytial virus in Slovenia
title_sort determining the seasonality of respiratory syncytial virus in slovenia
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767947/
https://www.ncbi.nlm.nih.gov/pubmed/32656961
http://dx.doi.org/10.1111/irv.12779
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