Cargando…

ChIAMM: A Mixture Model for Statistical Analysis of Long-Range Chromatin Interactions From ChIA-PET Experiments

Chromatin interaction analysis by paired-end tag sequencing (ChIA-PET) is an important experimental method for detecting specific protein-mediated chromatin loops genome-wide at high resolution. Here, we proposed a new statistical approach with a mixture model, chromatin interaction analysis using m...

Descripción completa

Detalles Bibliográficos
Autores principales:	Arega, Yibeltal, Jiang, Hao, Wang, Shuangqi, Zhang, Jingwen, Niu, Xiaohui, Li, Guoliang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7767989/ https://www.ncbi.nlm.nih.gov/pubmed/33381154 http://dx.doi.org/10.3389/fgene.2020.616160

Ejemplares similares

ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis
por: Li, Guipeng, et al.
Publicado: (2017)

ChIAPoP: a new tool for ChIA-PET data analysis
por: Huang, Weichun, et al.
Publicado: (2019)

Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)
por: Li, Guoliang, et al.
Publicado: (2019)

ChIA-PIPE: A fully automated pipeline for comprehensive ChIA-PET data analysis and visualization
por: Lee, Byoungkoo, et al.
Publicado: (2020)

Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application
por: Li, Guoliang, et al.
Publicado: (2014)

MACPET: model-based analysis for ChIA-PET
por: Vardaxis, Ioannis, et al.
Publicado: (2019)

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing
por: Li, Guoliang, et al.
Publicado: (2010)

MICC: an R package for identifying chromatin interactions from ChIA-PET data
por: He, Chao, et al.
Publicado: (2015)

DeepChIA-PET: Accurately predicting ChIA-PET from Hi-C and ChIP-seq with deep dilated networks
por: Liu, Tong, et al.
Publicado: (2023)

A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions
por: Paulsen, Jonas, et al.
Publicado: (2014)

Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data
por: Wang, Ruimin, et al.
Publicado: (2019)

Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for Mapping Chromatin Interactions and Understanding Transcription Regulation
por: Goh, Yufen, et al.
Publicado: (2012)

Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
por: Lun, Aaron T. L., et al.
Publicado: (2016)

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
por: Thiel, Denise, et al.
Publicado: (2019)

Xenopus tropicalis Genome Re-Scaffolding and Re-Annotation Reach the Resolution Required for In Vivo ChIA-PET Analysis
por: Buisine, Nicolas, et al.
Publicado: (2015)

3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process
por: Djekidel, Mohamed Nadhir, et al.
Publicado: (2015)

Ch-ch-ch-ch-ch-changes
Publicado: (2000)

Ch-ch-ch-ch-Changes
por: Madden, Ken M.
Publicado: (2011)

A ChIP on the shoulder? Chromatin immunoprecipitation and validation strategies for ChIP antibodies
por: Wardle, Fiona C., et al.
Publicado: (2015)

Chromatin Isolation by RNA Purification (ChIRP)
por: Chu, Ci, et al.
Publicado: (2012)

ChIP-less analysis of chromatin states
por: Su, Zhangli, et al.
Publicado: (2014)

Identification of significant chromatin contacts from HiChIP data by FitHiChIP
por: Bhattacharyya, Sourya, et al.
Publicado: (2019)

Impact of genome assembly status on ChIP-Seq and ChIP-PET data mapping
por: Buisine, Nicolas, et al.
Publicado: (2009)

Chromatin Immunoprecipitation (ChIP) in Mouse T-cell Lines
por: Giaimo, Benedetto Daniele, et al.
Publicado: (2017)

Rapid Identification Method for CH(4)/CO/CH(4)-CO Gas Mixtures Based on Electronic Nose
por: Yin, Jianxin, et al.
Publicado: (2023)

ChIPprimersDB: a public repository of verified qPCR primers for chromatin immunoprecipitation (ChIP)
por: Kurtenbach, Stefan, et al.
Publicado: (2018)

Indian association of medical microbiologists (IAMM) position paper on guidelines for COVID and SARSCoV2 infections
por: Ravi, V., et al.
Publicado: (2023)

Protocol for fractionation-assisted native ChIP (fanChIP) to capture protein-protein/DNA interactions on chromatin
por: Miyamoto, Ryo, et al.
Publicado: (2021)

SpikChIP: a novel computational methodology to compare multiple ChIP-seq using spike-in chromatin
por: Blanco, Enrique, et al.
Publicado: (2021)

Protocol: methodology for chromatin immunoprecipitation (ChIP) in Chlamydomonas reinhardtii
por: Strenkert, Daniela, et al.
Publicado: (2011)

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET
por: Mathur, Divya, et al.
Publicado: (2008)

Systematic optimization of parameters involved in preparation of chromatin and chromatin immunoprecipitation (ChIP) workflow
por: Rosenfeld, John M, et al.
Publicado: (2013)

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
por: Juric, Ivan, et al.
Publicado: (2019)

Improved ChIP-chip analysis by a mixture model approach
por: Sun, Wei, et al.
Publicado: (2009)

Influence of CO on Explosion Limits and Characteristics of the CH(4)/Air Mixture
por: Zhang, Xiaowen, et al.
Publicado: (2022)

Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: Identifying ChIP-quality p300 monoclonal antibodies
por: Gasper, William C., et al.
Publicado: (2014)

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data
por: Wu, George, et al.
Publicado: (2013)

A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis
por: Xie, Jingping, et al.
Publicado: (2008)

Fixated on fixation: using ChIP to interrogate the dynamics of chromatin interactions
por: Keren, Leeat, et al.
Publicado: (2013)

An Optimized Protocol for Isolating Primary Epithelial Cell Chromatin for ChIP
por: Browne, James A., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_00jore160uj23lgc64qld6qraq