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Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2

Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids res...

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Autores principales: Stefaniu, Amalia, Pirvu, Lucia, Albu, Bujor, Pintilie, Lucia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7770597/
https://www.ncbi.nlm.nih.gov/pubmed/33321862
http://dx.doi.org/10.3390/molecules25245828
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author Stefaniu, Amalia
Pirvu, Lucia
Albu, Bujor
Pintilie, Lucia
author_facet Stefaniu, Amalia
Pirvu, Lucia
Albu, Bujor
Pintilie, Lucia
author_sort Stefaniu, Amalia
collection PubMed
description Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection.
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spelling pubmed-77705972020-12-30 Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 Stefaniu, Amalia Pirvu, Lucia Albu, Bujor Pintilie, Lucia Molecules Article Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection. MDPI 2020-12-10 /pmc/articles/PMC7770597/ /pubmed/33321862 http://dx.doi.org/10.3390/molecules25245828 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Stefaniu, Amalia
Pirvu, Lucia
Albu, Bujor
Pintilie, Lucia
Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title_full Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title_fullStr Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title_full_unstemmed Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title_short Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
title_sort molecular docking study on several benzoic acid derivatives against sars-cov-2
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7770597/
https://www.ncbi.nlm.nih.gov/pubmed/33321862
http://dx.doi.org/10.3390/molecules25245828
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