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Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2
Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids res...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7770597/ https://www.ncbi.nlm.nih.gov/pubmed/33321862 http://dx.doi.org/10.3390/molecules25245828 |
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author | Stefaniu, Amalia Pirvu, Lucia Albu, Bujor Pintilie, Lucia |
author_facet | Stefaniu, Amalia Pirvu, Lucia Albu, Bujor Pintilie, Lucia |
author_sort | Stefaniu, Amalia |
collection | PubMed |
description | Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection. |
format | Online Article Text |
id | pubmed-7770597 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-77705972020-12-30 Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 Stefaniu, Amalia Pirvu, Lucia Albu, Bujor Pintilie, Lucia Molecules Article Several derivatives of benzoic acid and semisynthetic alkyl gallates were investigated by an in silico approach to evaluate their potential antiviral activity against SARS-CoV-2 main protease. Molecular docking studies were used to predict their binding affinity and interactions with amino acids residues from the active binding site of SARS-CoV-2 main protease, compared to boceprevir. Deep structural insights and quantum chemical reactivity analysis according to Koopmans’ theorem, as a result of density functional theory (DFT) computations, are reported. Additionally, drug-likeness assessment in terms of Lipinski’s and Weber’s rules for pharmaceutical candidates, is provided. The outcomes of docking and key molecular descriptors and properties were forward analyzed by the statistical approach of principal component analysis (PCA) to identify the degree of their correlation. The obtained results suggest two promising candidates for future drug development to fight against the coronavirus infection. MDPI 2020-12-10 /pmc/articles/PMC7770597/ /pubmed/33321862 http://dx.doi.org/10.3390/molecules25245828 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Stefaniu, Amalia Pirvu, Lucia Albu, Bujor Pintilie, Lucia Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title | Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title_full | Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title_fullStr | Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title_full_unstemmed | Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title_short | Molecular Docking Study on Several Benzoic Acid Derivatives against SARS-CoV-2 |
title_sort | molecular docking study on several benzoic acid derivatives against sars-cov-2 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7770597/ https://www.ncbi.nlm.nih.gov/pubmed/33321862 http://dx.doi.org/10.3390/molecules25245828 |
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