Cargando…
ResGNet-C: A graph convolutional neural network for detection of COVID-19
The widely spreading COVID-19 has caused thousands of hundreds of mortalities over the world in the past few months. Early diagnosis of the virus is of great significance for both of infected patients and doctors providing treatments. Chest Computerized tomography (CT) screening is one of the most s...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772101/ https://www.ncbi.nlm.nih.gov/pubmed/33390662 http://dx.doi.org/10.1016/j.neucom.2020.07.144 |
_version_ | 1783629807426207744 |
---|---|
author | Yu, Xiang Lu, Siyuan Guo, Lili Wang, Shui-Hua Zhang, Yu-Dong |
author_facet | Yu, Xiang Lu, Siyuan Guo, Lili Wang, Shui-Hua Zhang, Yu-Dong |
author_sort | Yu, Xiang |
collection | PubMed |
description | The widely spreading COVID-19 has caused thousands of hundreds of mortalities over the world in the past few months. Early diagnosis of the virus is of great significance for both of infected patients and doctors providing treatments. Chest Computerized tomography (CT) screening is one of the most straightforward techniques to detect pneumonia which was caused by the virus and thus to make the diagnosis. To facilitate the process of diagnosing COVID-19, we therefore developed a graph convolutional neural network ResGNet-C under ResGNet framework to automatically classify lung CT images into normal and confirmed pneumonia caused by COVID-19. In ResGNet-C, two by-products named NNet-C, ResNet101-C that showed high performance on detection of COVID-19 are simultaneously generated as well. Our best model ResGNet-C achieved an averaged accuracy at 0.9662 with an averaged sensitivity at 0.9733 and an averaged specificity at 0.9591 using five cross-validations on the dataset, which is comprised of 296 CT images. To our best knowledge, this is the first attempt at integrating graph knowledge into the COVID-19 classification task. Graphs are constructed according to the Euclidean distance between features extracted by our proposed ResNet101-C and then are encoded with the features to give the prediction results of CT images. Besides the high-performance system, which surpassed all state-of-the-art methods, our proposed graph construction method is simple, transferrable yet quite helpful for improving the performance of classifiers, as can be justified by the experimental results. |
format | Online Article Text |
id | pubmed-7772101 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier B.V. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77721012020-12-30 ResGNet-C: A graph convolutional neural network for detection of COVID-19 Yu, Xiang Lu, Siyuan Guo, Lili Wang, Shui-Hua Zhang, Yu-Dong Neurocomputing Article The widely spreading COVID-19 has caused thousands of hundreds of mortalities over the world in the past few months. Early diagnosis of the virus is of great significance for both of infected patients and doctors providing treatments. Chest Computerized tomography (CT) screening is one of the most straightforward techniques to detect pneumonia which was caused by the virus and thus to make the diagnosis. To facilitate the process of diagnosing COVID-19, we therefore developed a graph convolutional neural network ResGNet-C under ResGNet framework to automatically classify lung CT images into normal and confirmed pneumonia caused by COVID-19. In ResGNet-C, two by-products named NNet-C, ResNet101-C that showed high performance on detection of COVID-19 are simultaneously generated as well. Our best model ResGNet-C achieved an averaged accuracy at 0.9662 with an averaged sensitivity at 0.9733 and an averaged specificity at 0.9591 using five cross-validations on the dataset, which is comprised of 296 CT images. To our best knowledge, this is the first attempt at integrating graph knowledge into the COVID-19 classification task. Graphs are constructed according to the Euclidean distance between features extracted by our proposed ResNet101-C and then are encoded with the features to give the prediction results of CT images. Besides the high-performance system, which surpassed all state-of-the-art methods, our proposed graph construction method is simple, transferrable yet quite helpful for improving the performance of classifiers, as can be justified by the experimental results. Elsevier B.V. 2021-09-10 2020-12-30 /pmc/articles/PMC7772101/ /pubmed/33390662 http://dx.doi.org/10.1016/j.neucom.2020.07.144 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Article Yu, Xiang Lu, Siyuan Guo, Lili Wang, Shui-Hua Zhang, Yu-Dong ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title | ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title_full | ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title_fullStr | ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title_full_unstemmed | ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title_short | ResGNet-C: A graph convolutional neural network for detection of COVID-19 |
title_sort | resgnet-c: a graph convolutional neural network for detection of covid-19 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772101/ https://www.ncbi.nlm.nih.gov/pubmed/33390662 http://dx.doi.org/10.1016/j.neucom.2020.07.144 |
work_keys_str_mv | AT yuxiang resgnetcagraphconvolutionalneuralnetworkfordetectionofcovid19 AT lusiyuan resgnetcagraphconvolutionalneuralnetworkfordetectionofcovid19 AT guolili resgnetcagraphconvolutionalneuralnetworkfordetectionofcovid19 AT wangshuihua resgnetcagraphconvolutionalneuralnetworkfordetectionofcovid19 AT zhangyudong resgnetcagraphconvolutionalneuralnetworkfordetectionofcovid19 |