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Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samp...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772335/ https://www.ncbi.nlm.nih.gov/pubmed/33376238 http://dx.doi.org/10.1038/s41598-020-79720-1 |
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author | Kapopoulou, Adamandia Kapun, Martin Pieper, Bjorn Pavlidis, Pavlos Wilches, Ricardo Duchen, Pablo Stephan, Wolfgang Laurent, Stefan |
author_facet | Kapopoulou, Adamandia Kapun, Martin Pieper, Bjorn Pavlidis, Pavlos Wilches, Ricardo Duchen, Pablo Stephan, Wolfgang Laurent, Stefan |
author_sort | Kapopoulou, Adamandia |
collection | PubMed |
description | European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samples. Here we present a dataset consisting of 14 fully sequenced haploid genomes sampled from a natural population from the northern species range (Umeå, Sweden). We co-analyzed this new data with an African population to compare the likelihood of several competing demographic scenarios for European and African populations and show that gene flow improves the fit of demographic models to data. |
format | Online Article Text |
id | pubmed-7772335 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-77723352020-12-30 Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster Kapopoulou, Adamandia Kapun, Martin Pieper, Bjorn Pavlidis, Pavlos Wilches, Ricardo Duchen, Pablo Stephan, Wolfgang Laurent, Stefan Sci Rep Article European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samples. Here we present a dataset consisting of 14 fully sequenced haploid genomes sampled from a natural population from the northern species range (Umeå, Sweden). We co-analyzed this new data with an African population to compare the likelihood of several competing demographic scenarios for European and African populations and show that gene flow improves the fit of demographic models to data. Nature Publishing Group UK 2020-12-29 /pmc/articles/PMC7772335/ /pubmed/33376238 http://dx.doi.org/10.1038/s41598-020-79720-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kapopoulou, Adamandia Kapun, Martin Pieper, Bjorn Pavlidis, Pavlos Wilches, Ricardo Duchen, Pablo Stephan, Wolfgang Laurent, Stefan Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title | Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title_full | Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title_fullStr | Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title_full_unstemmed | Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title_short | Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster |
title_sort | demographic analyses of a new sample of haploid genomes from a swedish population of drosophila melanogaster |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772335/ https://www.ncbi.nlm.nih.gov/pubmed/33376238 http://dx.doi.org/10.1038/s41598-020-79720-1 |
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