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Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster

European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samp...

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Detalles Bibliográficos
Autores principales: Kapopoulou, Adamandia, Kapun, Martin, Pieper, Bjorn, Pavlidis, Pavlos, Wilches, Ricardo, Duchen, Pablo, Stephan, Wolfgang, Laurent, Stefan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772335/
https://www.ncbi.nlm.nih.gov/pubmed/33376238
http://dx.doi.org/10.1038/s41598-020-79720-1
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author Kapopoulou, Adamandia
Kapun, Martin
Pieper, Bjorn
Pavlidis, Pavlos
Wilches, Ricardo
Duchen, Pablo
Stephan, Wolfgang
Laurent, Stefan
author_facet Kapopoulou, Adamandia
Kapun, Martin
Pieper, Bjorn
Pavlidis, Pavlos
Wilches, Ricardo
Duchen, Pablo
Stephan, Wolfgang
Laurent, Stefan
author_sort Kapopoulou, Adamandia
collection PubMed
description European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samples. Here we present a dataset consisting of 14 fully sequenced haploid genomes sampled from a natural population from the northern species range (Umeå, Sweden). We co-analyzed this new data with an African population to compare the likelihood of several competing demographic scenarios for European and African populations and show that gene flow improves the fit of demographic models to data.
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spelling pubmed-77723352020-12-30 Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster Kapopoulou, Adamandia Kapun, Martin Pieper, Bjorn Pavlidis, Pavlos Wilches, Ricardo Duchen, Pablo Stephan, Wolfgang Laurent, Stefan Sci Rep Article European and African natural populations of Drosophila melanogaster have been the focus of several studies aiming at inferring demographic and adaptive processes based on genetic variation data. However, in these analyses little attention has been given to gene flow between African and European samples. Here we present a dataset consisting of 14 fully sequenced haploid genomes sampled from a natural population from the northern species range (Umeå, Sweden). We co-analyzed this new data with an African population to compare the likelihood of several competing demographic scenarios for European and African populations and show that gene flow improves the fit of demographic models to data. Nature Publishing Group UK 2020-12-29 /pmc/articles/PMC7772335/ /pubmed/33376238 http://dx.doi.org/10.1038/s41598-020-79720-1 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kapopoulou, Adamandia
Kapun, Martin
Pieper, Bjorn
Pavlidis, Pavlos
Wilches, Ricardo
Duchen, Pablo
Stephan, Wolfgang
Laurent, Stefan
Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title_full Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title_fullStr Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title_full_unstemmed Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title_short Demographic analyses of a new sample of haploid genomes from a Swedish population of Drosophila melanogaster
title_sort demographic analyses of a new sample of haploid genomes from a swedish population of drosophila melanogaster
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7772335/
https://www.ncbi.nlm.nih.gov/pubmed/33376238
http://dx.doi.org/10.1038/s41598-020-79720-1
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