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COVID-19 spatiotemporal research with workflow-based data analysis

Given the pertinence and acceleration of the spread of COVID-19, there is an increased need for the replicability of data models to verify the veracity of models and visualize important data. Most of these visualizations lack reproducibility, credibility, or accuracy, and are static, which makes it...

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Detalles Bibliográficos
Autores principales: Chintala, Srikar, Dutta, Ritvik, Tadmor, Doron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773529/
https://www.ncbi.nlm.nih.gov/pubmed/33387692
http://dx.doi.org/10.1016/j.meegid.2020.104701
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author Chintala, Srikar
Dutta, Ritvik
Tadmor, Doron
author_facet Chintala, Srikar
Dutta, Ritvik
Tadmor, Doron
author_sort Chintala, Srikar
collection PubMed
description Given the pertinence and acceleration of the spread of COVID-19, there is an increased need for the replicability of data models to verify the veracity of models and visualize important data. Most of these visualizations lack reproducibility, credibility, or accuracy, and are static, which makes it difficult to analyze the spread over time. Furthermore, most current visualizations depicting the spread of COVID-19 are at a global or country level, meaning there is a dearth of regional analysis within a country. Keeping these issues in mind, a replicable, efficient, and simple method to generate regional COVID-19 visualizations mapped with time was created by using the KNIME software, an open-source data analytics platform that can create user-friendly applications or workflows. For this analysis, Albania, Sweden, Ukraine, Denmark, Russia, India, and Australia were closely observed. Among the maps generated for the aforementioned countries, it was noticed that regions with a high population or high population density were often the epicenters within their respective country. The regions caused the virus to spread to their neighboring regions: kickstarting the “domino effect”, leading to the infection of another region until the country is overwhelmed with cases—what we call a proximity trend. These dynamic maps are crucial to fighting the pandemic because they can provide insight as to how COVID-19 spreads by providing researchers or officials with an accurate and insightful tool to aid their analysis. By being able to visualize the spread, health and government officials can dive deeper to identify the sources of transmission and attempt to stop or reverse them accordingly.
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spelling pubmed-77735292020-12-31 COVID-19 spatiotemporal research with workflow-based data analysis Chintala, Srikar Dutta, Ritvik Tadmor, Doron Infect Genet Evol Short Communication Given the pertinence and acceleration of the spread of COVID-19, there is an increased need for the replicability of data models to verify the veracity of models and visualize important data. Most of these visualizations lack reproducibility, credibility, or accuracy, and are static, which makes it difficult to analyze the spread over time. Furthermore, most current visualizations depicting the spread of COVID-19 are at a global or country level, meaning there is a dearth of regional analysis within a country. Keeping these issues in mind, a replicable, efficient, and simple method to generate regional COVID-19 visualizations mapped with time was created by using the KNIME software, an open-source data analytics platform that can create user-friendly applications or workflows. For this analysis, Albania, Sweden, Ukraine, Denmark, Russia, India, and Australia were closely observed. Among the maps generated for the aforementioned countries, it was noticed that regions with a high population or high population density were often the epicenters within their respective country. The regions caused the virus to spread to their neighboring regions: kickstarting the “domino effect”, leading to the infection of another region until the country is overwhelmed with cases—what we call a proximity trend. These dynamic maps are crucial to fighting the pandemic because they can provide insight as to how COVID-19 spreads by providing researchers or officials with an accurate and insightful tool to aid their analysis. By being able to visualize the spread, health and government officials can dive deeper to identify the sources of transmission and attempt to stop or reverse them accordingly. Elsevier B.V. 2021-03 2020-12-31 /pmc/articles/PMC7773529/ /pubmed/33387692 http://dx.doi.org/10.1016/j.meegid.2020.104701 Text en © 2020 Elsevier B.V. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Short Communication
Chintala, Srikar
Dutta, Ritvik
Tadmor, Doron
COVID-19 spatiotemporal research with workflow-based data analysis
title COVID-19 spatiotemporal research with workflow-based data analysis
title_full COVID-19 spatiotemporal research with workflow-based data analysis
title_fullStr COVID-19 spatiotemporal research with workflow-based data analysis
title_full_unstemmed COVID-19 spatiotemporal research with workflow-based data analysis
title_short COVID-19 spatiotemporal research with workflow-based data analysis
title_sort covid-19 spatiotemporal research with workflow-based data analysis
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773529/
https://www.ncbi.nlm.nih.gov/pubmed/33387692
http://dx.doi.org/10.1016/j.meegid.2020.104701
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