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Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome

The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent di...

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Autores principales: DSouza, Stafny, Ponnanna, Koushik, Chokkanna, Amruthavalli, Ramachandra, Nallur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773860/
https://www.ncbi.nlm.nih.gov/pubmed/33409344
http://dx.doi.org/10.1016/j.dib.2020.106674
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author DSouza, Stafny
Ponnanna, Koushik
Chokkanna, Amruthavalli
Ramachandra, Nallur
author_facet DSouza, Stafny
Ponnanna, Koushik
Chokkanna, Amruthavalli
Ramachandra, Nallur
author_sort DSouza, Stafny
collection PubMed
description The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent divergence history. The genomic DNA of D. n. nasuta Coorg strain was paired-end sequenced using Illumina HiSeq 2500 technology to obtain a draft genome assembly of 145.64 Mb. The generated assembly retrieved 93.6% of the conserved dipteran BUSCO orthologs. Approximately 85% of the ab initio predicted proteins exhibit sequence similarity to the proteins of D. albomicans which is the closest annotated species. This draft genome sequence is a valuable resource to Drosophila geneticists and evolutionary biologists to understand molecular organisation of the genome and its evolution during early stages of speciation.
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spelling pubmed-77738602021-01-05 Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome DSouza, Stafny Ponnanna, Koushik Chokkanna, Amruthavalli Ramachandra, Nallur Data Brief Data Article The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent divergence history. The genomic DNA of D. n. nasuta Coorg strain was paired-end sequenced using Illumina HiSeq 2500 technology to obtain a draft genome assembly of 145.64 Mb. The generated assembly retrieved 93.6% of the conserved dipteran BUSCO orthologs. Approximately 85% of the ab initio predicted proteins exhibit sequence similarity to the proteins of D. albomicans which is the closest annotated species. This draft genome sequence is a valuable resource to Drosophila geneticists and evolutionary biologists to understand molecular organisation of the genome and its evolution during early stages of speciation. Elsevier 2020-12-19 /pmc/articles/PMC7773860/ /pubmed/33409344 http://dx.doi.org/10.1016/j.dib.2020.106674 Text en © 2020 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
DSouza, Stafny
Ponnanna, Koushik
Chokkanna, Amruthavalli
Ramachandra, Nallur
Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title_full Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title_fullStr Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title_full_unstemmed Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title_short Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
title_sort illumina short-read sequencing data, de novo assembly and annotations of the drosophila nasuta nasuta genome
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773860/
https://www.ncbi.nlm.nih.gov/pubmed/33409344
http://dx.doi.org/10.1016/j.dib.2020.106674
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