Cargando…
Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome
The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent di...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773860/ https://www.ncbi.nlm.nih.gov/pubmed/33409344 http://dx.doi.org/10.1016/j.dib.2020.106674 |
_version_ | 1783630139074019328 |
---|---|
author | DSouza, Stafny Ponnanna, Koushik Chokkanna, Amruthavalli Ramachandra, Nallur |
author_facet | DSouza, Stafny Ponnanna, Koushik Chokkanna, Amruthavalli Ramachandra, Nallur |
author_sort | DSouza, Stafny |
collection | PubMed |
description | The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent divergence history. The genomic DNA of D. n. nasuta Coorg strain was paired-end sequenced using Illumina HiSeq 2500 technology to obtain a draft genome assembly of 145.64 Mb. The generated assembly retrieved 93.6% of the conserved dipteran BUSCO orthologs. Approximately 85% of the ab initio predicted proteins exhibit sequence similarity to the proteins of D. albomicans which is the closest annotated species. This draft genome sequence is a valuable resource to Drosophila geneticists and evolutionary biologists to understand molecular organisation of the genome and its evolution during early stages of speciation. |
format | Online Article Text |
id | pubmed-7773860 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-77738602021-01-05 Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome DSouza, Stafny Ponnanna, Koushik Chokkanna, Amruthavalli Ramachandra, Nallur Data Brief Data Article The Drosophila nasuta nasuta (D. n. nasuta) is a member of nasuta subgroup of immigrans species group of Drosophila widely distributed across South-East Asia and central to Southern Africa. It displays morphological similarities with other members of the nasuta subgroup with which it has a recent divergence history. The genomic DNA of D. n. nasuta Coorg strain was paired-end sequenced using Illumina HiSeq 2500 technology to obtain a draft genome assembly of 145.64 Mb. The generated assembly retrieved 93.6% of the conserved dipteran BUSCO orthologs. Approximately 85% of the ab initio predicted proteins exhibit sequence similarity to the proteins of D. albomicans which is the closest annotated species. This draft genome sequence is a valuable resource to Drosophila geneticists and evolutionary biologists to understand molecular organisation of the genome and its evolution during early stages of speciation. Elsevier 2020-12-19 /pmc/articles/PMC7773860/ /pubmed/33409344 http://dx.doi.org/10.1016/j.dib.2020.106674 Text en © 2020 The Authors. Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article DSouza, Stafny Ponnanna, Koushik Chokkanna, Amruthavalli Ramachandra, Nallur Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title | Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title_full | Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title_fullStr | Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title_full_unstemmed | Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title_short | Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genome |
title_sort | illumina short-read sequencing data, de novo assembly and annotations of the drosophila nasuta nasuta genome |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7773860/ https://www.ncbi.nlm.nih.gov/pubmed/33409344 http://dx.doi.org/10.1016/j.dib.2020.106674 |
work_keys_str_mv | AT dsouzastafny illuminashortreadsequencingdatadenovoassemblyandannotationsofthedrosophilanasutanasutagenome AT ponnannakoushik illuminashortreadsequencingdatadenovoassemblyandannotationsofthedrosophilanasutanasutagenome AT chokkannaamruthavalli illuminashortreadsequencingdatadenovoassemblyandannotationsofthedrosophilanasutanasutagenome AT ramachandranallur illuminashortreadsequencingdatadenovoassemblyandannotationsofthedrosophilanasutanasutagenome |