Cargando…
A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants
We report a previously undescribed member of the Helotiales that is superabundant in soils at two maritime Antarctic islands under Antarctic Hairgrass (Deschampsia antarctica Desv.). High throughput sequencing showed that up to 92% of DNA reads, and 68% of RNA reads, in soils from the islands were a...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775421/ https://www.ncbi.nlm.nih.gov/pubmed/33391247 http://dx.doi.org/10.3389/fmicb.2020.615608 |
_version_ | 1783630462044864512 |
---|---|
author | Newsham, Kevin K. Cox, Filipa Sands, Chester J. Garnett, Mark H. Magan, Naresh Horrocks, Claire A. Dungait, Jennifer A. J. Robinson, Clare H. |
author_facet | Newsham, Kevin K. Cox, Filipa Sands, Chester J. Garnett, Mark H. Magan, Naresh Horrocks, Claire A. Dungait, Jennifer A. J. Robinson, Clare H. |
author_sort | Newsham, Kevin K. |
collection | PubMed |
description | We report a previously undescribed member of the Helotiales that is superabundant in soils at two maritime Antarctic islands under Antarctic Hairgrass (Deschampsia antarctica Desv.). High throughput sequencing showed that up to 92% of DNA reads, and 68% of RNA reads, in soils from the islands were accounted for by the fungus. Sequencing of the large subunit region of ribosomal (r)DNA places the fungus close to the Pezizellaceae, Porodiplodiaceae, and Sclerotiniaceae, with analyses of internal transcribed spacer regions of rDNA indicating that it has affinities to previously unnamed soil and root fungi from alpine, cool temperate and Low Arctic regions. The fungus was found to be most frequent in soils containing C aged to 1,000–1,200 years before present. The relative abundances of its DNA and RNA reads were positively associated with soil carbon and nitrogen concentrations and δ(13)C values, with the relative abundance of its DNA being negatively associated with soil pH value. An isolate of the fungus produces flask-shaped phialides with a pronounced venter bearing masses of conidia measuring 4.5–6(7) × 1.8–2.5 μm, suggestive of anamorphic Chalara. Enzymatic studies indicate that the isolate strongly synthesizes the extracellular enzyme acid phosphatase, and also exhibits alkaline phosphatase and naphthol-AS-BI-phosphohydrolase activities. Ecophysiological measurements indicate optimal hyphal growth of the isolate at a pH of 4.2–4.5 and a water potential of −0.66 MPa. The isolate is a psychrotroph, exhibiting measureable hyphal growth at −2°C, optimal hyphal extension rate at 15°C and negligible growth at 25°C. It is proposed that the rising temperatures that are predicted to occur in maritime Antarctica later this century will increase the growth rate of the fungus, with the potential loss of ancient C from soils. Analyses using the GlobalFungi Database indicate that the fungus is present in cold, acidic soils on all continents. We advocate further studies to identify whether it is superabundant in soils under D. antarctica elsewhere in maritime Antarctica, and for further isolates to be obtained so that the species can be formally described. |
format | Online Article Text |
id | pubmed-7775421 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77754212021-01-02 A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants Newsham, Kevin K. Cox, Filipa Sands, Chester J. Garnett, Mark H. Magan, Naresh Horrocks, Claire A. Dungait, Jennifer A. J. Robinson, Clare H. Front Microbiol Microbiology We report a previously undescribed member of the Helotiales that is superabundant in soils at two maritime Antarctic islands under Antarctic Hairgrass (Deschampsia antarctica Desv.). High throughput sequencing showed that up to 92% of DNA reads, and 68% of RNA reads, in soils from the islands were accounted for by the fungus. Sequencing of the large subunit region of ribosomal (r)DNA places the fungus close to the Pezizellaceae, Porodiplodiaceae, and Sclerotiniaceae, with analyses of internal transcribed spacer regions of rDNA indicating that it has affinities to previously unnamed soil and root fungi from alpine, cool temperate and Low Arctic regions. The fungus was found to be most frequent in soils containing C aged to 1,000–1,200 years before present. The relative abundances of its DNA and RNA reads were positively associated with soil carbon and nitrogen concentrations and δ(13)C values, with the relative abundance of its DNA being negatively associated with soil pH value. An isolate of the fungus produces flask-shaped phialides with a pronounced venter bearing masses of conidia measuring 4.5–6(7) × 1.8–2.5 μm, suggestive of anamorphic Chalara. Enzymatic studies indicate that the isolate strongly synthesizes the extracellular enzyme acid phosphatase, and also exhibits alkaline phosphatase and naphthol-AS-BI-phosphohydrolase activities. Ecophysiological measurements indicate optimal hyphal growth of the isolate at a pH of 4.2–4.5 and a water potential of −0.66 MPa. The isolate is a psychrotroph, exhibiting measureable hyphal growth at −2°C, optimal hyphal extension rate at 15°C and negligible growth at 25°C. It is proposed that the rising temperatures that are predicted to occur in maritime Antarctica later this century will increase the growth rate of the fungus, with the potential loss of ancient C from soils. Analyses using the GlobalFungi Database indicate that the fungus is present in cold, acidic soils on all continents. We advocate further studies to identify whether it is superabundant in soils under D. antarctica elsewhere in maritime Antarctica, and for further isolates to be obtained so that the species can be formally described. Frontiers Media S.A. 2020-12-18 /pmc/articles/PMC7775421/ /pubmed/33391247 http://dx.doi.org/10.3389/fmicb.2020.615608 Text en Copyright © 2020 Newsham, Cox, Sands, Garnett, Magan, Horrocks, Dungait and Robinson. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Newsham, Kevin K. Cox, Filipa Sands, Chester J. Garnett, Mark H. Magan, Naresh Horrocks, Claire A. Dungait, Jennifer A. J. Robinson, Clare H. A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title | A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title_full | A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title_fullStr | A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title_full_unstemmed | A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title_short | A Previously Undescribed Helotialean Fungus That Is Superabundant in Soil Under Maritime Antarctic Higher Plants |
title_sort | previously undescribed helotialean fungus that is superabundant in soil under maritime antarctic higher plants |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775421/ https://www.ncbi.nlm.nih.gov/pubmed/33391247 http://dx.doi.org/10.3389/fmicb.2020.615608 |
work_keys_str_mv | AT newshamkevink apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT coxfilipa apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT sandschesterj apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT garnettmarkh apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT magannaresh apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT horrocksclairea apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT dungaitjenniferaj apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT robinsonclareh apreviouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT newshamkevink previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT coxfilipa previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT sandschesterj previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT garnettmarkh previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT magannaresh previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT horrocksclairea previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT dungaitjenniferaj previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants AT robinsonclareh previouslyundescribedhelotialeanfungusthatissuperabundantinsoilundermaritimeantarctichigherplants |