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Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA

OBJECTIVE: The purpose of the present study was to detect novel glycolysis-related gene signatures of prognostic values for patients with clear cell renal cell carcinoma (ccRCC). METHODS: Glycolysis-related gene sets were acquired from the Molecular Signatures Database (V7.0). Gene Set Enrichment An...

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Autores principales: Wu, Chengjiang, Cai, Xiaojie, Yan, Jie, Deng, Anyu, Cao, Yun, Zhu, Xueming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775602/
https://www.ncbi.nlm.nih.gov/pubmed/33391344
http://dx.doi.org/10.3389/fgene.2020.589663
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author Wu, Chengjiang
Cai, Xiaojie
Yan, Jie
Deng, Anyu
Cao, Yun
Zhu, Xueming
author_facet Wu, Chengjiang
Cai, Xiaojie
Yan, Jie
Deng, Anyu
Cao, Yun
Zhu, Xueming
author_sort Wu, Chengjiang
collection PubMed
description OBJECTIVE: The purpose of the present study was to detect novel glycolysis-related gene signatures of prognostic values for patients with clear cell renal cell carcinoma (ccRCC). METHODS: Glycolysis-related gene sets were acquired from the Molecular Signatures Database (V7.0). Gene Set Enrichment Analysis (GSEA) software (4.0.3) was applied to analyze glycolysis-related gene sets. The Perl programming language (5.32.0) was used to extract glycolysis-related genes and clinical information of patients with ccRCC. The receiver operating characteristic curve (ROC) and Kaplan–Meier curve were drawn by the R programming language (3.6.3). RESULTS: The four glycolysis-related genes (B3GAT3, CENPA, AGL, and ALDH3A2) associated with prognosis were identified using Cox proportional regression analysis. A risk score staging system was established to predict the outcomes of patients with ccRCC. The patients with ccRCC were classified into the low-risk group and high-risk group. CONCLUSIONS: We have successfully constructed a risk staging model for ccRCC. The model has a better performance in predicting the prognosis of patients, which may have positive reference value for the treatment and curative effect evaluation of ccRCC.
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spelling pubmed-77756022021-01-02 Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA Wu, Chengjiang Cai, Xiaojie Yan, Jie Deng, Anyu Cao, Yun Zhu, Xueming Front Genet Genetics OBJECTIVE: The purpose of the present study was to detect novel glycolysis-related gene signatures of prognostic values for patients with clear cell renal cell carcinoma (ccRCC). METHODS: Glycolysis-related gene sets were acquired from the Molecular Signatures Database (V7.0). Gene Set Enrichment Analysis (GSEA) software (4.0.3) was applied to analyze glycolysis-related gene sets. The Perl programming language (5.32.0) was used to extract glycolysis-related genes and clinical information of patients with ccRCC. The receiver operating characteristic curve (ROC) and Kaplan–Meier curve were drawn by the R programming language (3.6.3). RESULTS: The four glycolysis-related genes (B3GAT3, CENPA, AGL, and ALDH3A2) associated with prognosis were identified using Cox proportional regression analysis. A risk score staging system was established to predict the outcomes of patients with ccRCC. The patients with ccRCC were classified into the low-risk group and high-risk group. CONCLUSIONS: We have successfully constructed a risk staging model for ccRCC. The model has a better performance in predicting the prognosis of patients, which may have positive reference value for the treatment and curative effect evaluation of ccRCC. Frontiers Media S.A. 2020-12-18 /pmc/articles/PMC7775602/ /pubmed/33391344 http://dx.doi.org/10.3389/fgene.2020.589663 Text en Copyright © 2020 Wu, Cai, Yan, Deng, Cao and Zhu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Wu, Chengjiang
Cai, Xiaojie
Yan, Jie
Deng, Anyu
Cao, Yun
Zhu, Xueming
Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title_full Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title_fullStr Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title_full_unstemmed Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title_short Identification of Novel Glycolysis-Related Gene Signatures Associated With Prognosis of Patients With Clear Cell Renal Cell Carcinoma Based on TCGA
title_sort identification of novel glycolysis-related gene signatures associated with prognosis of patients with clear cell renal cell carcinoma based on tcga
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775602/
https://www.ncbi.nlm.nih.gov/pubmed/33391344
http://dx.doi.org/10.3389/fgene.2020.589663
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