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Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological proces...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775733/ https://www.ncbi.nlm.nih.gov/pubmed/33392159 http://dx.doi.org/10.3389/fbioe.2020.566984 |
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author | Ran, Yuxin Yin, Nanlin Huang, Dongni Zhao, Yangyu Yang, Jing Zhang, Hanwen Qi, Hongbo |
author_facet | Ran, Yuxin Yin, Nanlin Huang, Dongni Zhao, Yangyu Yang, Jing Zhang, Hanwen Qi, Hongbo |
author_sort | Ran, Yuxin |
collection | PubMed |
description | Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological processes of various diseases. However, it is still unclear whether circRNAs are abnormal or involves in the PTB pathology. In this study, we analyzed RNA-seq data of peripheral blood from preterm and term pregnant women and verified with microarray data. There were 211 circRNA expression disorders in PTB, of which 68 increased and 143 decreased. Bioinformatics analysis revealed that the top 20 circRNAs competitively bind 68 miRNAs, thereby regulating 622 mRNAs mainly related to immunity, inflammation, and nerve activity, which may ultimately contribute to the occurrence of PTB. Moreover, 6 regulatory pairs, including hsa-MORC3_0001–hsa-miR-1248–CHRM2 were the core parts of this mechanism network, which might be therapeutic targets for PTB. Besides, ROC analysis indicated that hsa-ANKFY1_0025, hsa-FAM13B_0019, and hsa-NUSAP1_0010 (AUC = 0.7138, 0.9589, 1.000) have an excellent discrimination ability for PTB. Taken together, we explored for the first time the circRNA expression profile of PTB, and preliminarily analyzed its regulatory mechanism and predictive value for PTB, thus bringing new light to the diagnosis and treatment of PTB. |
format | Online Article Text |
id | pubmed-7775733 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77757332021-01-02 Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth Ran, Yuxin Yin, Nanlin Huang, Dongni Zhao, Yangyu Yang, Jing Zhang, Hanwen Qi, Hongbo Front Bioeng Biotechnol Bioengineering and Biotechnology Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological processes of various diseases. However, it is still unclear whether circRNAs are abnormal or involves in the PTB pathology. In this study, we analyzed RNA-seq data of peripheral blood from preterm and term pregnant women and verified with microarray data. There were 211 circRNA expression disorders in PTB, of which 68 increased and 143 decreased. Bioinformatics analysis revealed that the top 20 circRNAs competitively bind 68 miRNAs, thereby regulating 622 mRNAs mainly related to immunity, inflammation, and nerve activity, which may ultimately contribute to the occurrence of PTB. Moreover, 6 regulatory pairs, including hsa-MORC3_0001–hsa-miR-1248–CHRM2 were the core parts of this mechanism network, which might be therapeutic targets for PTB. Besides, ROC analysis indicated that hsa-ANKFY1_0025, hsa-FAM13B_0019, and hsa-NUSAP1_0010 (AUC = 0.7138, 0.9589, 1.000) have an excellent discrimination ability for PTB. Taken together, we explored for the first time the circRNA expression profile of PTB, and preliminarily analyzed its regulatory mechanism and predictive value for PTB, thus bringing new light to the diagnosis and treatment of PTB. Frontiers Media S.A. 2020-12-02 /pmc/articles/PMC7775733/ /pubmed/33392159 http://dx.doi.org/10.3389/fbioe.2020.566984 Text en Copyright © 2020 Ran, Yin, Huang, Zhao, Yang, Zhang and Qi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology Ran, Yuxin Yin, Nanlin Huang, Dongni Zhao, Yangyu Yang, Jing Zhang, Hanwen Qi, Hongbo Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title | Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title_full | Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title_fullStr | Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title_full_unstemmed | Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title_short | Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth |
title_sort | identification and characterization of circular rna as a novel regulator and biomarker in preterm birth |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775733/ https://www.ncbi.nlm.nih.gov/pubmed/33392159 http://dx.doi.org/10.3389/fbioe.2020.566984 |
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