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Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth

Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological proces...

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Autores principales: Ran, Yuxin, Yin, Nanlin, Huang, Dongni, Zhao, Yangyu, Yang, Jing, Zhang, Hanwen, Qi, Hongbo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775733/
https://www.ncbi.nlm.nih.gov/pubmed/33392159
http://dx.doi.org/10.3389/fbioe.2020.566984
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author Ran, Yuxin
Yin, Nanlin
Huang, Dongni
Zhao, Yangyu
Yang, Jing
Zhang, Hanwen
Qi, Hongbo
author_facet Ran, Yuxin
Yin, Nanlin
Huang, Dongni
Zhao, Yangyu
Yang, Jing
Zhang, Hanwen
Qi, Hongbo
author_sort Ran, Yuxin
collection PubMed
description Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological processes of various diseases. However, it is still unclear whether circRNAs are abnormal or involves in the PTB pathology. In this study, we analyzed RNA-seq data of peripheral blood from preterm and term pregnant women and verified with microarray data. There were 211 circRNA expression disorders in PTB, of which 68 increased and 143 decreased. Bioinformatics analysis revealed that the top 20 circRNAs competitively bind 68 miRNAs, thereby regulating 622 mRNAs mainly related to immunity, inflammation, and nerve activity, which may ultimately contribute to the occurrence of PTB. Moreover, 6 regulatory pairs, including hsa-MORC3_0001–hsa-miR-1248–CHRM2 were the core parts of this mechanism network, which might be therapeutic targets for PTB. Besides, ROC analysis indicated that hsa-ANKFY1_0025, hsa-FAM13B_0019, and hsa-NUSAP1_0010 (AUC = 0.7138, 0.9589, 1.000) have an excellent discrimination ability for PTB. Taken together, we explored for the first time the circRNA expression profile of PTB, and preliminarily analyzed its regulatory mechanism and predictive value for PTB, thus bringing new light to the diagnosis and treatment of PTB.
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spelling pubmed-77757332021-01-02 Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth Ran, Yuxin Yin, Nanlin Huang, Dongni Zhao, Yangyu Yang, Jing Zhang, Hanwen Qi, Hongbo Front Bioeng Biotechnol Bioengineering and Biotechnology Preterm birth (PTB), as the leading cause of neonatal death, is a severe threat to maternal–fetal health. The diagnosis and treatment of PTB are difficult as its underlying mechanism still unknown. Circular RNA (circRNA) is an emerging molecule that plays an essential role in the pathological processes of various diseases. However, it is still unclear whether circRNAs are abnormal or involves in the PTB pathology. In this study, we analyzed RNA-seq data of peripheral blood from preterm and term pregnant women and verified with microarray data. There were 211 circRNA expression disorders in PTB, of which 68 increased and 143 decreased. Bioinformatics analysis revealed that the top 20 circRNAs competitively bind 68 miRNAs, thereby regulating 622 mRNAs mainly related to immunity, inflammation, and nerve activity, which may ultimately contribute to the occurrence of PTB. Moreover, 6 regulatory pairs, including hsa-MORC3_0001–hsa-miR-1248–CHRM2 were the core parts of this mechanism network, which might be therapeutic targets for PTB. Besides, ROC analysis indicated that hsa-ANKFY1_0025, hsa-FAM13B_0019, and hsa-NUSAP1_0010 (AUC = 0.7138, 0.9589, 1.000) have an excellent discrimination ability for PTB. Taken together, we explored for the first time the circRNA expression profile of PTB, and preliminarily analyzed its regulatory mechanism and predictive value for PTB, thus bringing new light to the diagnosis and treatment of PTB. Frontiers Media S.A. 2020-12-02 /pmc/articles/PMC7775733/ /pubmed/33392159 http://dx.doi.org/10.3389/fbioe.2020.566984 Text en Copyright © 2020 Ran, Yin, Huang, Zhao, Yang, Zhang and Qi. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Ran, Yuxin
Yin, Nanlin
Huang, Dongni
Zhao, Yangyu
Yang, Jing
Zhang, Hanwen
Qi, Hongbo
Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title_full Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title_fullStr Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title_full_unstemmed Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title_short Identification and Characterization of Circular RNA as a Novel Regulator and Biomarker in Preterm Birth
title_sort identification and characterization of circular rna as a novel regulator and biomarker in preterm birth
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7775733/
https://www.ncbi.nlm.nih.gov/pubmed/33392159
http://dx.doi.org/10.3389/fbioe.2020.566984
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