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468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study

BACKGROUND: In the early stages of a novel pandemic, testing is simultaneously in high need but low supply, making efficient use of tests of paramount importance. One approach to improve the efficiency of tests is to mix samples from multiple individuals, only testing individuals when the pooled sam...

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Autor principal: Rewley, Jeffrey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7777723/
http://dx.doi.org/10.1093/ofid/ofaa439.661
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author Rewley, Jeffrey
author_facet Rewley, Jeffrey
author_sort Rewley, Jeffrey
collection PubMed
description BACKGROUND: In the early stages of a novel pandemic, testing is simultaneously in high need but low supply, making efficient use of tests of paramount importance. One approach to improve the efficiency of tests is to mix samples from multiple individuals, only testing individuals when the pooled sample returns a positive. METHODS: I build on current models which assume patients’ sero-status is independent by allowing for correlation betweenconsecutive tests (e.g. if a family were all infected and were all tested together). In this model, I simulate 10,000 patients being tested in sequence, with population sero-prevalence ranging from 1% to 25%, using batch sizes from 3 to 10, and assuming the increased probability of consecutive infections ranged from 0% to 50%. RESULTS: I find that as the likelihood of consecutive infected patients increases, the efficiency of specimen pooling increases. As well, the optimal size of the batch increases in the presence of clustered sequences of infected patients. Heat map indicating the manner in which the number of tests needed is reduced as population prevalence and correlation between cases changes. Red indicates that there is no reduction in the number of tests, and blue indicates a near 100% reduction in the number of tests, with intermediate colors indicating intermediate fractions. [Image: see text] CONCLUSION: This analysis indicates further improvements in specimen pooling efficiency can begained by taking advantage of the pattern of patient testing. DISCLOSURES: Jeffrey Rewley, PhD, MS, American Board of Internal Medicine (Employee)
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spelling pubmed-77777232021-01-07 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study Rewley, Jeffrey Open Forum Infect Dis Poster Abstracts BACKGROUND: In the early stages of a novel pandemic, testing is simultaneously in high need but low supply, making efficient use of tests of paramount importance. One approach to improve the efficiency of tests is to mix samples from multiple individuals, only testing individuals when the pooled sample returns a positive. METHODS: I build on current models which assume patients’ sero-status is independent by allowing for correlation betweenconsecutive tests (e.g. if a family were all infected and were all tested together). In this model, I simulate 10,000 patients being tested in sequence, with population sero-prevalence ranging from 1% to 25%, using batch sizes from 3 to 10, and assuming the increased probability of consecutive infections ranged from 0% to 50%. RESULTS: I find that as the likelihood of consecutive infected patients increases, the efficiency of specimen pooling increases. As well, the optimal size of the batch increases in the presence of clustered sequences of infected patients. Heat map indicating the manner in which the number of tests needed is reduced as population prevalence and correlation between cases changes. Red indicates that there is no reduction in the number of tests, and blue indicates a near 100% reduction in the number of tests, with intermediate colors indicating intermediate fractions. [Image: see text] CONCLUSION: This analysis indicates further improvements in specimen pooling efficiency can begained by taking advantage of the pattern of patient testing. DISCLOSURES: Jeffrey Rewley, PhD, MS, American Board of Internal Medicine (Employee) Oxford University Press 2020-12-31 /pmc/articles/PMC7777723/ http://dx.doi.org/10.1093/ofid/ofaa439.661 Text en © The Author 2020. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Poster Abstracts
Rewley, Jeffrey
468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title_full 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title_fullStr 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title_full_unstemmed 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title_short 468. Specimen pooling conserves additional testing resources when patients’ infection status is correlated: A simulation study
title_sort 468. specimen pooling conserves additional testing resources when patients’ infection status is correlated: a simulation study
topic Poster Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7777723/
http://dx.doi.org/10.1093/ofid/ofaa439.661
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