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54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection

BACKGROUND: Coronavirus disease 2019 (CoVID-19) admissions, oft complicated by an uncertain trajectory, lent to treatment influenced by supposition. Respiratory bacterial co-infection frequently was invoked. The purpose of this study was to determine the respiratory pathogen distribution and antibio...

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Autores principales: Chapin, Ryan, Mercuro, Nicholas J, Christina, Yen, Li, Catherine, Howard, Gold, McCoy, Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7777966/
http://dx.doi.org/10.1093/ofid/ofaa439.364
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author Chapin, Ryan
Mercuro, Nicholas J
Christina, Yen
Li, Catherine
Howard, Gold
McCoy, Christopher
author_facet Chapin, Ryan
Mercuro, Nicholas J
Christina, Yen
Li, Catherine
Howard, Gold
McCoy, Christopher
author_sort Chapin, Ryan
collection PubMed
description BACKGROUND: Coronavirus disease 2019 (CoVID-19) admissions, oft complicated by an uncertain trajectory, lent to treatment influenced by supposition. Respiratory bacterial co-infection frequently was invoked. The purpose of this study was to determine the respiratory pathogen distribution and antibiotic prescribing patterns in hospitalized patients with CoVID-19. METHODS: Patients with a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ICD-10 code and/or positive polymerase chain reaction (PCR) hospitalized between March 1 and May 31, 2020 were included. Antibiotic utilization (patient days of therapy-pDOT) was collected for the institution during this period and two years prior. Respiratory microbiologic cultures were reviewed to examine the frequency of co-infection on presentation, categorized as within 3 calendar days from admission or afterward. The relationship of antibiotic utilization to positive cultures was also categorized. RESULTS: Of the 7,969 encounters, 829 were ICD-10 coded and/or confirmed SARS-CoV-2 PCR positive and 196 (23.6%) had positive respiratory cultures. 89.8% of patients had endotracheal samples, the rest were isolated from sputum or bronchoalveolar lavage (17.4% and 6.6%, respectively). Patients were more likely to isolate commensal respiratory flora (108 versus 78 patients within the first 3 days of presentation. Notable isolates such as Staphylococcus aureus and Pseudomonas aeruginosa, were more often isolated after 3 days of hospitalization. While the CoVID-19 average hospital census was only 14.7% of the total, antibiotic utilization, (pDOT/1000) was 2.3 times higher, 831.9 versus 368.3 across the institution. During similar periods in 2018 and 2019, days of therapy overall were lower. For CoVID-19 infected patients, the frequency of antibiotic initiation was 73.2%. The length of therapy was on average 8 days with a high rate of observed restarts. Table 1: Patient characteristics for CoVID-19 infected patients admitted during March 1 to May 31, 2020 [Image: see text] Figure 1: Positive respiratory pathogen culture results for CoVID-19 encounters (March 1-May 31, 2020) [Image: see text] Table 2: Prevalence and select types of antibiotics administered to CoVID-19 patients. (March 1-May 31, 2020) [Image: see text] CONCLUSION: Bacterial co-infection in an acute viral process is generally low. In this examination of CoVID-19 infected patients, the rate of any positive respiratory culture was 23.6%. A disproportionate effect on the volume of antibiotics and total days of therapy prompted an interest in early stewardship efforts and education. Table 3: Antibiotic consumption (patient days of therapy) for CoVID-19 encounters (March 1-May 31, 2020) compared to total consumption during identical time periods in 2018, 2019, and 2020 [Image: see text] DISCLOSURES: All Authors: No reported disclosures
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spelling pubmed-77779662021-01-07 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection Chapin, Ryan Mercuro, Nicholas J Christina, Yen Li, Catherine Howard, Gold McCoy, Christopher Open Forum Infect Dis Poster Abstracts BACKGROUND: Coronavirus disease 2019 (CoVID-19) admissions, oft complicated by an uncertain trajectory, lent to treatment influenced by supposition. Respiratory bacterial co-infection frequently was invoked. The purpose of this study was to determine the respiratory pathogen distribution and antibiotic prescribing patterns in hospitalized patients with CoVID-19. METHODS: Patients with a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ICD-10 code and/or positive polymerase chain reaction (PCR) hospitalized between March 1 and May 31, 2020 were included. Antibiotic utilization (patient days of therapy-pDOT) was collected for the institution during this period and two years prior. Respiratory microbiologic cultures were reviewed to examine the frequency of co-infection on presentation, categorized as within 3 calendar days from admission or afterward. The relationship of antibiotic utilization to positive cultures was also categorized. RESULTS: Of the 7,969 encounters, 829 were ICD-10 coded and/or confirmed SARS-CoV-2 PCR positive and 196 (23.6%) had positive respiratory cultures. 89.8% of patients had endotracheal samples, the rest were isolated from sputum or bronchoalveolar lavage (17.4% and 6.6%, respectively). Patients were more likely to isolate commensal respiratory flora (108 versus 78 patients within the first 3 days of presentation. Notable isolates such as Staphylococcus aureus and Pseudomonas aeruginosa, were more often isolated after 3 days of hospitalization. While the CoVID-19 average hospital census was only 14.7% of the total, antibiotic utilization, (pDOT/1000) was 2.3 times higher, 831.9 versus 368.3 across the institution. During similar periods in 2018 and 2019, days of therapy overall were lower. For CoVID-19 infected patients, the frequency of antibiotic initiation was 73.2%. The length of therapy was on average 8 days with a high rate of observed restarts. Table 1: Patient characteristics for CoVID-19 infected patients admitted during March 1 to May 31, 2020 [Image: see text] Figure 1: Positive respiratory pathogen culture results for CoVID-19 encounters (March 1-May 31, 2020) [Image: see text] Table 2: Prevalence and select types of antibiotics administered to CoVID-19 patients. (March 1-May 31, 2020) [Image: see text] CONCLUSION: Bacterial co-infection in an acute viral process is generally low. In this examination of CoVID-19 infected patients, the rate of any positive respiratory culture was 23.6%. A disproportionate effect on the volume of antibiotics and total days of therapy prompted an interest in early stewardship efforts and education. Table 3: Antibiotic consumption (patient days of therapy) for CoVID-19 encounters (March 1-May 31, 2020) compared to total consumption during identical time periods in 2018, 2019, and 2020 [Image: see text] DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2020-12-31 /pmc/articles/PMC7777966/ http://dx.doi.org/10.1093/ofid/ofaa439.364 Text en © The Author 2020. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Poster Abstracts
Chapin, Ryan
Mercuro, Nicholas J
Christina, Yen
Li, Catherine
Howard, Gold
McCoy, Christopher
54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title_full 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title_fullStr 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title_full_unstemmed 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title_short 54. Microbiologic Characterization and Antibacterial Use in Hospitalized Adults with covid-19 Infection
title_sort 54. microbiologic characterization and antibacterial use in hospitalized adults with covid-19 infection
topic Poster Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7777966/
http://dx.doi.org/10.1093/ofid/ofaa439.364
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