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Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19
INTRODUCTION: Zukamu granules may play a potential role in the fight against the Coronavirus, COVID-19. The purpose of this study was to explore the mechanisms of Zukamu granules using network pharmacology combined with molecular docking. METHODS: The Traditional Chinese Medicine systems pharmacolog...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier GmbH.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778372/ https://www.ncbi.nlm.nih.gov/pubmed/33425074 http://dx.doi.org/10.1016/j.eujim.2020.101282 |
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author | Zeng, Yijia Lou, Guanhua Ren, Yuanyuan Li, Tingna Zhang, Xiaorui Wang, Jin Huang, Qinwan |
author_facet | Zeng, Yijia Lou, Guanhua Ren, Yuanyuan Li, Tingna Zhang, Xiaorui Wang, Jin Huang, Qinwan |
author_sort | Zeng, Yijia |
collection | PubMed |
description | INTRODUCTION: Zukamu granules may play a potential role in the fight against the Coronavirus, COVID-19. The purpose of this study was to explore the mechanisms of Zukamu granules using network pharmacology combined with molecular docking. METHODS: The Traditional Chinese Medicine systems pharmacology (TCMSP) database was used to filter the active compounds and the targets of each drug in the prescription. The Genecards and OMIM databases were used for identifying the targets related to COVID-19. The STRING database was used to analyze the intersection targets. Compound - target interaction and protein-protein interaction networks were constructed using Cytoscape to decipher the anti-COVID-19 mechanisms of action of the prescription. The Kyoto Encyclopedia of Genes and Genome (KEGG) pathway and Gene Ontology (GO) enrichment analysis was performed to investigate the molecular mechanisms of action. Finally, the interaction between the targets and the active compounds was verified by molecular docking technology. RESULTS: A total of 66 targets were identified. Further analysis identified 10 most important targets and 12 key compounds. Besides, 1340 biological processes, 43 cell compositions, and 87 molecular function items were obtained (P < 0.05). One hundred and thirty pathways were obtained (P < 0.05). The results of molecular docking showed that there was a stable binding between the active compounds and the targets. CONCLUSION: Analysis of the constructed pharmacological network results allowed for the prediction and interpretation of the multi-constituent, multi-targeted, and multi-pathway mechanisms of Zukamu granules as a potential source for supportive treatment of COVID-19. |
format | Online Article Text |
id | pubmed-7778372 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier GmbH. |
record_format | MEDLINE/PubMed |
spelling | pubmed-77783722021-01-04 Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 Zeng, Yijia Lou, Guanhua Ren, Yuanyuan Li, Tingna Zhang, Xiaorui Wang, Jin Huang, Qinwan Eur J Integr Med Research Paper INTRODUCTION: Zukamu granules may play a potential role in the fight against the Coronavirus, COVID-19. The purpose of this study was to explore the mechanisms of Zukamu granules using network pharmacology combined with molecular docking. METHODS: The Traditional Chinese Medicine systems pharmacology (TCMSP) database was used to filter the active compounds and the targets of each drug in the prescription. The Genecards and OMIM databases were used for identifying the targets related to COVID-19. The STRING database was used to analyze the intersection targets. Compound - target interaction and protein-protein interaction networks were constructed using Cytoscape to decipher the anti-COVID-19 mechanisms of action of the prescription. The Kyoto Encyclopedia of Genes and Genome (KEGG) pathway and Gene Ontology (GO) enrichment analysis was performed to investigate the molecular mechanisms of action. Finally, the interaction between the targets and the active compounds was verified by molecular docking technology. RESULTS: A total of 66 targets were identified. Further analysis identified 10 most important targets and 12 key compounds. Besides, 1340 biological processes, 43 cell compositions, and 87 molecular function items were obtained (P < 0.05). One hundred and thirty pathways were obtained (P < 0.05). The results of molecular docking showed that there was a stable binding between the active compounds and the targets. CONCLUSION: Analysis of the constructed pharmacological network results allowed for the prediction and interpretation of the multi-constituent, multi-targeted, and multi-pathway mechanisms of Zukamu granules as a potential source for supportive treatment of COVID-19. Elsevier GmbH. 2021-02 2021-01-02 /pmc/articles/PMC7778372/ /pubmed/33425074 http://dx.doi.org/10.1016/j.eujim.2020.101282 Text en © 2021 Elsevier GmbH. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Research Paper Zeng, Yijia Lou, Guanhua Ren, Yuanyuan Li, Tingna Zhang, Xiaorui Wang, Jin Huang, Qinwan Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title | Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title_full | Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title_fullStr | Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title_full_unstemmed | Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title_short | Network pharmacology-based analysis of Zukamu granules for the treatment of COVID-19 |
title_sort | network pharmacology-based analysis of zukamu granules for the treatment of covid-19 |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778372/ https://www.ncbi.nlm.nih.gov/pubmed/33425074 http://dx.doi.org/10.1016/j.eujim.2020.101282 |
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