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Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778505/ https://www.ncbi.nlm.nih.gov/pubmed/33425052 http://dx.doi.org/10.1007/s12652-020-02702-8 |
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author | Mahmoud, Nourelhoda M. Mahmoud, Mohamed H. Alamery, Salman Fouad, Hassan |
author_facet | Mahmoud, Nourelhoda M. Mahmoud, Mohamed H. Alamery, Salman Fouad, Hassan |
author_sort | Mahmoud, Nourelhoda M. |
collection | PubMed |
description | The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected patients over time can spread infectious disease. The virus may develop further mutations, and that there might be a more toxic virulent strain, which leads to several environmental risk factors. Therefore, it is essential to monitor and characterize patient profiles, variants, symptoms, geographic locations, and treatment responses to analyze and evaluate infectious disease patterns among humans. This research proposes the Evolutionary tree analysis (ETA) for the molecular evolutionary genetic analysis to reduce medical risk factors. Furthermore, The Maximum likelihood tree method (MLTM) has been used to analyze the selective pressure, which is examined to identify a mutation that may influence the infectious disease transmission pattern’s clinical progress. This study also utilizes ETA with Markov Chain Bayesian Statistics (MCBS) approach to reconstruct transmission trees with sequence information. The experimental shows that the proposed ETA-MCBS method achieves a 97.55% accuracy, prediction of 99.56%, and 98.55% performance compared to other existing methods. |
format | Online Article Text |
id | pubmed-7778505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-77785052021-01-04 Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach Mahmoud, Nourelhoda M. Mahmoud, Mohamed H. Alamery, Salman Fouad, Hassan J Ambient Intell Humaniz Comput Original Research The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected patients over time can spread infectious disease. The virus may develop further mutations, and that there might be a more toxic virulent strain, which leads to several environmental risk factors. Therefore, it is essential to monitor and characterize patient profiles, variants, symptoms, geographic locations, and treatment responses to analyze and evaluate infectious disease patterns among humans. This research proposes the Evolutionary tree analysis (ETA) for the molecular evolutionary genetic analysis to reduce medical risk factors. Furthermore, The Maximum likelihood tree method (MLTM) has been used to analyze the selective pressure, which is examined to identify a mutation that may influence the infectious disease transmission pattern’s clinical progress. This study also utilizes ETA with Markov Chain Bayesian Statistics (MCBS) approach to reconstruct transmission trees with sequence information. The experimental shows that the proposed ETA-MCBS method achieves a 97.55% accuracy, prediction of 99.56%, and 98.55% performance compared to other existing methods. Springer Berlin Heidelberg 2021-01-02 2021 /pmc/articles/PMC7778505/ /pubmed/33425052 http://dx.doi.org/10.1007/s12652-020-02702-8 Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Original Research Mahmoud, Nourelhoda M. Mahmoud, Mohamed H. Alamery, Salman Fouad, Hassan Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title | Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title_full | Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title_fullStr | Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title_full_unstemmed | Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title_short | Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
title_sort | structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778505/ https://www.ncbi.nlm.nih.gov/pubmed/33425052 http://dx.doi.org/10.1007/s12652-020-02702-8 |
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