Cargando…

Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach

The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected...

Descripción completa

Detalles Bibliográficos
Autores principales: Mahmoud, Nourelhoda M., Mahmoud, Mohamed H., Alamery, Salman, Fouad, Hassan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778505/
https://www.ncbi.nlm.nih.gov/pubmed/33425052
http://dx.doi.org/10.1007/s12652-020-02702-8
_version_ 1783631140914987008
author Mahmoud, Nourelhoda M.
Mahmoud, Mohamed H.
Alamery, Salman
Fouad, Hassan
author_facet Mahmoud, Nourelhoda M.
Mahmoud, Mohamed H.
Alamery, Salman
Fouad, Hassan
author_sort Mahmoud, Nourelhoda M.
collection PubMed
description The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected patients over time can spread infectious disease. The virus may develop further mutations, and that there might be a more toxic virulent strain, which leads to several environmental risk factors. Therefore, it is essential to monitor and characterize patient profiles, variants, symptoms, geographic locations, and treatment responses to analyze and evaluate infectious disease patterns among humans. This research proposes the Evolutionary tree analysis (ETA) for the molecular evolutionary genetic analysis to reduce medical risk factors. Furthermore, The Maximum likelihood tree method (MLTM) has been used to analyze the selective pressure, which is examined to identify a mutation that may influence the infectious disease transmission pattern’s clinical progress. This study also utilizes ETA with Markov Chain Bayesian Statistics (MCBS) approach to reconstruct transmission trees with sequence information. The experimental shows that the proposed ETA-MCBS method achieves a 97.55% accuracy, prediction of 99.56%, and 98.55% performance compared to other existing methods.
format Online
Article
Text
id pubmed-7778505
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-77785052021-01-04 Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach Mahmoud, Nourelhoda M. Mahmoud, Mohamed H. Alamery, Salman Fouad, Hassan J Ambient Intell Humaniz Comput Original Research The contagious disease transmission pattern outbreak caused a massive human casualty and became a pandemic, as confirmed by the World Health Organization (WHO). The present research aims to understand the infectious disease transmission pattern outbreak due to molecular epidemiology. Hence, infected patients over time can spread infectious disease. The virus may develop further mutations, and that there might be a more toxic virulent strain, which leads to several environmental risk factors. Therefore, it is essential to monitor and characterize patient profiles, variants, symptoms, geographic locations, and treatment responses to analyze and evaluate infectious disease patterns among humans. This research proposes the Evolutionary tree analysis (ETA) for the molecular evolutionary genetic analysis to reduce medical risk factors. Furthermore, The Maximum likelihood tree method (MLTM) has been used to analyze the selective pressure, which is examined to identify a mutation that may influence the infectious disease transmission pattern’s clinical progress. This study also utilizes ETA with Markov Chain Bayesian Statistics (MCBS) approach to reconstruct transmission trees with sequence information. The experimental shows that the proposed ETA-MCBS method achieves a 97.55% accuracy, prediction of 99.56%, and 98.55% performance compared to other existing methods. Springer Berlin Heidelberg 2021-01-02 2021 /pmc/articles/PMC7778505/ /pubmed/33425052 http://dx.doi.org/10.1007/s12652-020-02702-8 Text en © Springer-Verlag GmbH Germany, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Original Research
Mahmoud, Nourelhoda M.
Mahmoud, Mohamed H.
Alamery, Salman
Fouad, Hassan
Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title_full Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title_fullStr Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title_full_unstemmed Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title_short Structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
title_sort structural modeling and phylogenetic analysis for infectious disease transmission pattern based on maximum likelihood tree approach
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778505/
https://www.ncbi.nlm.nih.gov/pubmed/33425052
http://dx.doi.org/10.1007/s12652-020-02702-8
work_keys_str_mv AT mahmoudnourelhodam structuralmodelingandphylogeneticanalysisforinfectiousdiseasetransmissionpatternbasedonmaximumlikelihoodtreeapproach
AT mahmoudmohamedh structuralmodelingandphylogeneticanalysisforinfectiousdiseasetransmissionpatternbasedonmaximumlikelihoodtreeapproach
AT alamerysalman structuralmodelingandphylogeneticanalysisforinfectiousdiseasetransmissionpatternbasedonmaximumlikelihoodtreeapproach
AT fouadhassan structuralmodelingandphylogeneticanalysisforinfectiousdiseasetransmissionpatternbasedonmaximumlikelihoodtreeapproach