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GlycoPOST realizes FAIR principles for glycomics mass spectrometry data

For the reproducibility and sustainability of scientific research, FAIRness (Findable, Accessible, Interoperable and Re-usable), with respect to the release of raw data obtained by researchers, is one of the most important principles underpinning the future of open science. In genomics and transcrip...

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Autores principales: Watanabe, Yu, Aoki-Kinoshita, Kiyoko F, Ishihama, Yasushi, Okuda, Shujiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778884/
https://www.ncbi.nlm.nih.gov/pubmed/33174597
http://dx.doi.org/10.1093/nar/gkaa1012
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author Watanabe, Yu
Aoki-Kinoshita, Kiyoko F
Ishihama, Yasushi
Okuda, Shujiro
author_facet Watanabe, Yu
Aoki-Kinoshita, Kiyoko F
Ishihama, Yasushi
Okuda, Shujiro
author_sort Watanabe, Yu
collection PubMed
description For the reproducibility and sustainability of scientific research, FAIRness (Findable, Accessible, Interoperable and Re-usable), with respect to the release of raw data obtained by researchers, is one of the most important principles underpinning the future of open science. In genomics and transcriptomics, the sharing of raw data from next-generation sequencers is made possible through public repositories. In addition, in proteomics, the deposition of raw data from mass spectrometry (MS) experiments into repositories is becoming standardized. However, a standard repository for such MS data had not yet been established in glycomics. With the increasing number of glycomics MS data, therefore, we have developed GlycoPOST (https://glycopost.glycosmos.org/), a repository for raw MS data generated from glycomics experiments. In just the first year since the release of GlycoPOST, 73 projects have already been registered by researchers around the world, and the number of registered projects is continuously growing, making a significant contribution to the future FAIRness of the glycomics field. GlycoPOST is a free resource to the community and accepts (and will continue to accept in the future) raw data regardless of vendor-specific formats.
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spelling pubmed-77788842021-01-06 GlycoPOST realizes FAIR principles for glycomics mass spectrometry data Watanabe, Yu Aoki-Kinoshita, Kiyoko F Ishihama, Yasushi Okuda, Shujiro Nucleic Acids Res Database Issue For the reproducibility and sustainability of scientific research, FAIRness (Findable, Accessible, Interoperable and Re-usable), with respect to the release of raw data obtained by researchers, is one of the most important principles underpinning the future of open science. In genomics and transcriptomics, the sharing of raw data from next-generation sequencers is made possible through public repositories. In addition, in proteomics, the deposition of raw data from mass spectrometry (MS) experiments into repositories is becoming standardized. However, a standard repository for such MS data had not yet been established in glycomics. With the increasing number of glycomics MS data, therefore, we have developed GlycoPOST (https://glycopost.glycosmos.org/), a repository for raw MS data generated from glycomics experiments. In just the first year since the release of GlycoPOST, 73 projects have already been registered by researchers around the world, and the number of registered projects is continuously growing, making a significant contribution to the future FAIRness of the glycomics field. GlycoPOST is a free resource to the community and accepts (and will continue to accept in the future) raw data regardless of vendor-specific formats. Oxford University Press 2020-11-11 /pmc/articles/PMC7778884/ /pubmed/33174597 http://dx.doi.org/10.1093/nar/gkaa1012 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Watanabe, Yu
Aoki-Kinoshita, Kiyoko F
Ishihama, Yasushi
Okuda, Shujiro
GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title_full GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title_fullStr GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title_full_unstemmed GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title_short GlycoPOST realizes FAIR principles for glycomics mass spectrometry data
title_sort glycopost realizes fair principles for glycomics mass spectrometry data
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778884/
https://www.ncbi.nlm.nih.gov/pubmed/33174597
http://dx.doi.org/10.1093/nar/gkaa1012
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