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GPCRdb in 2021: integrating GPCR sequence, structure and function
G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778909/ https://www.ncbi.nlm.nih.gov/pubmed/33270898 http://dx.doi.org/10.1093/nar/gkaa1080 |
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author | Kooistra, Albert J Mordalski, Stefan Pándy-Szekeres, Gáspár Esguerra, Mauricio Mamyrbekov, Alibek Munk, Christian Keserű, György M Gloriam, David E |
author_facet | Kooistra, Albert J Mordalski, Stefan Pándy-Szekeres, Gáspár Esguerra, Mauricio Mamyrbekov, Alibek Munk, Christian Keserű, György M Gloriam, David E |
author_sort | Kooistra, Albert J |
collection | PubMed |
description | G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design and dissemination of published datasets. Here, we describe new and updated GPCRdb resources with a particular focus on integration of sequence, structure and function. GPCRdb contains all human non-olfactory GPCRs (and >27 000 orthologs), G-proteins and arrestins. It includes over 2 000 drug and in-trial agents and nearly 200 000 ligands with activity and availability data. GPCRdb annotates all published GPCR structures (updated monthly), which are also offered in a refined version (with re-modeled missing/distorted regions and reverted mutations) and provides structure models of all human non-olfactory receptors in inactive, intermediate and active states. Mutagenesis data in the GPCRdb spans natural genetic variants, GPCR-G protein interfaces, ligand sites and thermostabilising mutations. A new sequence signature tool for identification of functional residue determinants has been added and two data driven tools to design ligand site mutations and constructs for structure determination have been updated extending their coverage of receptors and modifications. The GPCRdb is available at https://gpcrdb.org. |
format | Online Article Text |
id | pubmed-7778909 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77789092021-01-06 GPCRdb in 2021: integrating GPCR sequence, structure and function Kooistra, Albert J Mordalski, Stefan Pándy-Szekeres, Gáspár Esguerra, Mauricio Mamyrbekov, Alibek Munk, Christian Keserű, György M Gloriam, David E Nucleic Acids Res Database Issue G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design and dissemination of published datasets. Here, we describe new and updated GPCRdb resources with a particular focus on integration of sequence, structure and function. GPCRdb contains all human non-olfactory GPCRs (and >27 000 orthologs), G-proteins and arrestins. It includes over 2 000 drug and in-trial agents and nearly 200 000 ligands with activity and availability data. GPCRdb annotates all published GPCR structures (updated monthly), which are also offered in a refined version (with re-modeled missing/distorted regions and reverted mutations) and provides structure models of all human non-olfactory receptors in inactive, intermediate and active states. Mutagenesis data in the GPCRdb spans natural genetic variants, GPCR-G protein interfaces, ligand sites and thermostabilising mutations. A new sequence signature tool for identification of functional residue determinants has been added and two data driven tools to design ligand site mutations and constructs for structure determination have been updated extending their coverage of receptors and modifications. The GPCRdb is available at https://gpcrdb.org. Oxford University Press 2020-12-03 /pmc/articles/PMC7778909/ /pubmed/33270898 http://dx.doi.org/10.1093/nar/gkaa1080 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Kooistra, Albert J Mordalski, Stefan Pándy-Szekeres, Gáspár Esguerra, Mauricio Mamyrbekov, Alibek Munk, Christian Keserű, György M Gloriam, David E GPCRdb in 2021: integrating GPCR sequence, structure and function |
title | GPCRdb in 2021: integrating GPCR sequence, structure and function |
title_full | GPCRdb in 2021: integrating GPCR sequence, structure and function |
title_fullStr | GPCRdb in 2021: integrating GPCR sequence, structure and function |
title_full_unstemmed | GPCRdb in 2021: integrating GPCR sequence, structure and function |
title_short | GPCRdb in 2021: integrating GPCR sequence, structure and function |
title_sort | gpcrdb in 2021: integrating gpcr sequence, structure and function |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778909/ https://www.ncbi.nlm.nih.gov/pubmed/33270898 http://dx.doi.org/10.1093/nar/gkaa1080 |
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