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GPCRdb in 2021: integrating GPCR sequence, structure and function

G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design...

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Autores principales: Kooistra, Albert J, Mordalski, Stefan, Pándy-Szekeres, Gáspár, Esguerra, Mauricio, Mamyrbekov, Alibek, Munk, Christian, Keserű, György M, Gloriam, David E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778909/
https://www.ncbi.nlm.nih.gov/pubmed/33270898
http://dx.doi.org/10.1093/nar/gkaa1080
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author Kooistra, Albert J
Mordalski, Stefan
Pándy-Szekeres, Gáspár
Esguerra, Mauricio
Mamyrbekov, Alibek
Munk, Christian
Keserű, György M
Gloriam, David E
author_facet Kooistra, Albert J
Mordalski, Stefan
Pándy-Szekeres, Gáspár
Esguerra, Mauricio
Mamyrbekov, Alibek
Munk, Christian
Keserű, György M
Gloriam, David E
author_sort Kooistra, Albert J
collection PubMed
description G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design and dissemination of published datasets. Here, we describe new and updated GPCRdb resources with a particular focus on integration of sequence, structure and function. GPCRdb contains all human non-olfactory GPCRs (and >27 000 orthologs), G-proteins and arrestins. It includes over 2 000 drug and in-trial agents and nearly 200 000 ligands with activity and availability data. GPCRdb annotates all published GPCR structures (updated monthly), which are also offered in a refined version (with re-modeled missing/distorted regions and reverted mutations) and provides structure models of all human non-olfactory receptors in inactive, intermediate and active states. Mutagenesis data in the GPCRdb spans natural genetic variants, GPCR-G protein interfaces, ligand sites and thermostabilising mutations. A new sequence signature tool for identification of functional residue determinants has been added and two data driven tools to design ligand site mutations and constructs for structure determination have been updated extending their coverage of receptors and modifications. The GPCRdb is available at https://gpcrdb.org.
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spelling pubmed-77789092021-01-06 GPCRdb in 2021: integrating GPCR sequence, structure and function Kooistra, Albert J Mordalski, Stefan Pándy-Szekeres, Gáspár Esguerra, Mauricio Mamyrbekov, Alibek Munk, Christian Keserű, György M Gloriam, David E Nucleic Acids Res Database Issue G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design and dissemination of published datasets. Here, we describe new and updated GPCRdb resources with a particular focus on integration of sequence, structure and function. GPCRdb contains all human non-olfactory GPCRs (and >27 000 orthologs), G-proteins and arrestins. It includes over 2 000 drug and in-trial agents and nearly 200 000 ligands with activity and availability data. GPCRdb annotates all published GPCR structures (updated monthly), which are also offered in a refined version (with re-modeled missing/distorted regions and reverted mutations) and provides structure models of all human non-olfactory receptors in inactive, intermediate and active states. Mutagenesis data in the GPCRdb spans natural genetic variants, GPCR-G protein interfaces, ligand sites and thermostabilising mutations. A new sequence signature tool for identification of functional residue determinants has been added and two data driven tools to design ligand site mutations and constructs for structure determination have been updated extending their coverage of receptors and modifications. The GPCRdb is available at https://gpcrdb.org. Oxford University Press 2020-12-03 /pmc/articles/PMC7778909/ /pubmed/33270898 http://dx.doi.org/10.1093/nar/gkaa1080 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Kooistra, Albert J
Mordalski, Stefan
Pándy-Szekeres, Gáspár
Esguerra, Mauricio
Mamyrbekov, Alibek
Munk, Christian
Keserű, György M
Gloriam, David E
GPCRdb in 2021: integrating GPCR sequence, structure and function
title GPCRdb in 2021: integrating GPCR sequence, structure and function
title_full GPCRdb in 2021: integrating GPCR sequence, structure and function
title_fullStr GPCRdb in 2021: integrating GPCR sequence, structure and function
title_full_unstemmed GPCRdb in 2021: integrating GPCR sequence, structure and function
title_short GPCRdb in 2021: integrating GPCR sequence, structure and function
title_sort gpcrdb in 2021: integrating gpcr sequence, structure and function
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778909/
https://www.ncbi.nlm.nih.gov/pubmed/33270898
http://dx.doi.org/10.1093/nar/gkaa1080
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