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Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations

HbVar (http://globin.bx.psu.edu/hbvar) is a widely-used locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we r...

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Autores principales: Giardine, Belinda M, Joly, Philippe, Pissard, Serge, Wajcman, Henri, K. Chui, David H, Hardison, Ross C, Patrinos, George P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778921/
https://www.ncbi.nlm.nih.gov/pubmed/33125055
http://dx.doi.org/10.1093/nar/gkaa959
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author Giardine, Belinda M
Joly, Philippe
Pissard, Serge
Wajcman, Henri
K. Chui, David H
Hardison, Ross C
Patrinos, George P
author_facet Giardine, Belinda M
Joly, Philippe
Pissard, Serge
Wajcman, Henri
K. Chui, David H
Hardison, Ross C
Patrinos, George P
author_sort Giardine, Belinda M
collection PubMed
description HbVar (http://globin.bx.psu.edu/hbvar) is a widely-used locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we report several advances for the database. We made clinically relevant updates of HbVar, implemented as additional querying options in the HbVar query page, allowing the user to explore the clinical phenotype of compound heterozygous patients. We also made significant improvements to the HbVar front page, making comparative data querying, analysis and output more user-friendly. We continued to expand and enrich the regular data content, involving 1820 variants, 230 of which are new entries. We also increased the querying potential and expanded the usefulness of HbVar database in the clinical setting. These several additions, expansions and updates should improve the utility of HbVar both for the globin research community and in a clinical setting.
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spelling pubmed-77789212021-01-06 Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations Giardine, Belinda M Joly, Philippe Pissard, Serge Wajcman, Henri K. Chui, David H Hardison, Ross C Patrinos, George P Nucleic Acids Res Database Issue HbVar (http://globin.bx.psu.edu/hbvar) is a widely-used locus-specific database (LSDB) launched 20 years ago by a multi-center academic effort to provide timely information on the numerous genomic variants leading to hemoglobin variants and all types of thalassemia and hemoglobinopathies. Here, we report several advances for the database. We made clinically relevant updates of HbVar, implemented as additional querying options in the HbVar query page, allowing the user to explore the clinical phenotype of compound heterozygous patients. We also made significant improvements to the HbVar front page, making comparative data querying, analysis and output more user-friendly. We continued to expand and enrich the regular data content, involving 1820 variants, 230 of which are new entries. We also increased the querying potential and expanded the usefulness of HbVar database in the clinical setting. These several additions, expansions and updates should improve the utility of HbVar both for the globin research community and in a clinical setting. Oxford University Press 2020-10-30 /pmc/articles/PMC7778921/ /pubmed/33125055 http://dx.doi.org/10.1093/nar/gkaa959 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Giardine, Belinda M
Joly, Philippe
Pissard, Serge
Wajcman, Henri
K. Chui, David H
Hardison, Ross C
Patrinos, George P
Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title_full Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title_fullStr Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title_full_unstemmed Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title_short Clinically relevant updates of the HbVar database of human hemoglobin variants and thalassemia mutations
title_sort clinically relevant updates of the hbvar database of human hemoglobin variants and thalassemia mutations
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778921/
https://www.ncbi.nlm.nih.gov/pubmed/33125055
http://dx.doi.org/10.1093/nar/gkaa959
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