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ConjuPepDB: a database of peptide–drug conjugates

Peptide–drug conjugates are organic molecules composed of (i) a small drug molecule, (ii) a peptide and (iii) a linker. The drug molecule is mandatory for the biological action, however, its efficacy can be enhanced by targeted delivery, which often also reduces unwanted side effects. For site-speci...

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Autores principales: Balogh, Balázs, Ivánczi, Márton, Nizami, Bilal, Beke-Somfai, Tamás, Mándity, István M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778964/
https://www.ncbi.nlm.nih.gov/pubmed/33125057
http://dx.doi.org/10.1093/nar/gkaa950
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author Balogh, Balázs
Ivánczi, Márton
Nizami, Bilal
Beke-Somfai, Tamás
Mándity, István M
author_facet Balogh, Balázs
Ivánczi, Márton
Nizami, Bilal
Beke-Somfai, Tamás
Mándity, István M
author_sort Balogh, Balázs
collection PubMed
description Peptide–drug conjugates are organic molecules composed of (i) a small drug molecule, (ii) a peptide and (iii) a linker. The drug molecule is mandatory for the biological action, however, its efficacy can be enhanced by targeted delivery, which often also reduces unwanted side effects. For site-specificity the peptide part is mainly responsible. The linker attaches chemically the drug to the peptide, but it could also be biodegradable which ensures controlled liberation of the small drug. Despite the importance of the field, there is no public comprehensive database on these species. Herein we describe ConjuPepBD, a freely available, fully annotated and manually curated database of peptide drug conjugates. ConjuPepDB contains basic information about the entries, e.g. CAS number. Furthermore, it also implies their biomedical application and the type of chemical conjugation employed. It covers more than 1600 conjugates from ∼230 publications. The web-interface is user-friendly, intuitive, and useable on several devices, e.g. phones, tablets, PCs. The webpage allows the user to search for content using numerous criteria, chemical structure and a help page is also provided. Besides giving quick insight for newcomers, ConjuPepDB is hoped to be also helpful for researchers from various related fields. The database is accessible at: https://conjupepdb.ttk.hu/.
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spelling pubmed-77789642021-01-06 ConjuPepDB: a database of peptide–drug conjugates Balogh, Balázs Ivánczi, Márton Nizami, Bilal Beke-Somfai, Tamás Mándity, István M Nucleic Acids Res Database Issue Peptide–drug conjugates are organic molecules composed of (i) a small drug molecule, (ii) a peptide and (iii) a linker. The drug molecule is mandatory for the biological action, however, its efficacy can be enhanced by targeted delivery, which often also reduces unwanted side effects. For site-specificity the peptide part is mainly responsible. The linker attaches chemically the drug to the peptide, but it could also be biodegradable which ensures controlled liberation of the small drug. Despite the importance of the field, there is no public comprehensive database on these species. Herein we describe ConjuPepBD, a freely available, fully annotated and manually curated database of peptide drug conjugates. ConjuPepDB contains basic information about the entries, e.g. CAS number. Furthermore, it also implies their biomedical application and the type of chemical conjugation employed. It covers more than 1600 conjugates from ∼230 publications. The web-interface is user-friendly, intuitive, and useable on several devices, e.g. phones, tablets, PCs. The webpage allows the user to search for content using numerous criteria, chemical structure and a help page is also provided. Besides giving quick insight for newcomers, ConjuPepDB is hoped to be also helpful for researchers from various related fields. The database is accessible at: https://conjupepdb.ttk.hu/. Oxford University Press 2020-10-30 /pmc/articles/PMC7778964/ /pubmed/33125057 http://dx.doi.org/10.1093/nar/gkaa950 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Balogh, Balázs
Ivánczi, Márton
Nizami, Bilal
Beke-Somfai, Tamás
Mándity, István M
ConjuPepDB: a database of peptide–drug conjugates
title ConjuPepDB: a database of peptide–drug conjugates
title_full ConjuPepDB: a database of peptide–drug conjugates
title_fullStr ConjuPepDB: a database of peptide–drug conjugates
title_full_unstemmed ConjuPepDB: a database of peptide–drug conjugates
title_short ConjuPepDB: a database of peptide–drug conjugates
title_sort conjupepdb: a database of peptide–drug conjugates
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778964/
https://www.ncbi.nlm.nih.gov/pubmed/33125057
http://dx.doi.org/10.1093/nar/gkaa950
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