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MoonProt 3.0: an update of the moonlighting proteins database
MoonProt 3.0 (http://moonlightingproteins.org) is an updated open-access database storing expert-curated annotations for moonlighting proteins. Moonlighting proteins have two or more physiologically relevant distinct biochemical or biophysical functions performed by a single polypeptide chain. Here,...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778978/ https://www.ncbi.nlm.nih.gov/pubmed/33245761 http://dx.doi.org/10.1093/nar/gkaa1101 |
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author | Chen, Chang Liu, Haipeng Zabad, Shadi Rivera, Nina Rowin, Emily Hassan, Maheen Gomez De Jesus, Stephanie M Llinás Santos, Paola S Kravchenko, Karyna Mikhova, Mariia Ketterer, Sophia Shen, Annabel Shen, Sophia Navas, Erin Horan, Bryan Raudsepp, Jaak Jeffery, Constance |
author_facet | Chen, Chang Liu, Haipeng Zabad, Shadi Rivera, Nina Rowin, Emily Hassan, Maheen Gomez De Jesus, Stephanie M Llinás Santos, Paola S Kravchenko, Karyna Mikhova, Mariia Ketterer, Sophia Shen, Annabel Shen, Sophia Navas, Erin Horan, Bryan Raudsepp, Jaak Jeffery, Constance |
author_sort | Chen, Chang |
collection | PubMed |
description | MoonProt 3.0 (http://moonlightingproteins.org) is an updated open-access database storing expert-curated annotations for moonlighting proteins. Moonlighting proteins have two or more physiologically relevant distinct biochemical or biophysical functions performed by a single polypeptide chain. Here, we describe an expansion in the database since our previous report in the Database Issue of Nucleic Acids Research in 2018. For this release, the number of proteins annotated has been expanded to over 500 proteins and dozens of protein annotations have been updated with additional information, including more structures in the Protein Data Bank, compared with version 2.0. The new entries include more examples from humans, plants and archaea, more proteins involved in disease and proteins with different combinations of functions. More kinds of information about the proteins and the species in which they have multiple functions has been added, including CATH and SCOP classification of structure, known and predicted disorder, predicted transmembrane helices, type of organism, relationship of the protein to disease, and relationship of organism to cause of disease. |
format | Online Article Text |
id | pubmed-7778978 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77789782021-01-06 MoonProt 3.0: an update of the moonlighting proteins database Chen, Chang Liu, Haipeng Zabad, Shadi Rivera, Nina Rowin, Emily Hassan, Maheen Gomez De Jesus, Stephanie M Llinás Santos, Paola S Kravchenko, Karyna Mikhova, Mariia Ketterer, Sophia Shen, Annabel Shen, Sophia Navas, Erin Horan, Bryan Raudsepp, Jaak Jeffery, Constance Nucleic Acids Res Database Issue MoonProt 3.0 (http://moonlightingproteins.org) is an updated open-access database storing expert-curated annotations for moonlighting proteins. Moonlighting proteins have two or more physiologically relevant distinct biochemical or biophysical functions performed by a single polypeptide chain. Here, we describe an expansion in the database since our previous report in the Database Issue of Nucleic Acids Research in 2018. For this release, the number of proteins annotated has been expanded to over 500 proteins and dozens of protein annotations have been updated with additional information, including more structures in the Protein Data Bank, compared with version 2.0. The new entries include more examples from humans, plants and archaea, more proteins involved in disease and proteins with different combinations of functions. More kinds of information about the proteins and the species in which they have multiple functions has been added, including CATH and SCOP classification of structure, known and predicted disorder, predicted transmembrane helices, type of organism, relationship of the protein to disease, and relationship of organism to cause of disease. Oxford University Press 2020-11-27 /pmc/articles/PMC7778978/ /pubmed/33245761 http://dx.doi.org/10.1093/nar/gkaa1101 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Chen, Chang Liu, Haipeng Zabad, Shadi Rivera, Nina Rowin, Emily Hassan, Maheen Gomez De Jesus, Stephanie M Llinás Santos, Paola S Kravchenko, Karyna Mikhova, Mariia Ketterer, Sophia Shen, Annabel Shen, Sophia Navas, Erin Horan, Bryan Raudsepp, Jaak Jeffery, Constance MoonProt 3.0: an update of the moonlighting proteins database |
title | MoonProt 3.0: an update of the moonlighting proteins database |
title_full | MoonProt 3.0: an update of the moonlighting proteins database |
title_fullStr | MoonProt 3.0: an update of the moonlighting proteins database |
title_full_unstemmed | MoonProt 3.0: an update of the moonlighting proteins database |
title_short | MoonProt 3.0: an update of the moonlighting proteins database |
title_sort | moonprot 3.0: an update of the moonlighting proteins database |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778978/ https://www.ncbi.nlm.nih.gov/pubmed/33245761 http://dx.doi.org/10.1093/nar/gkaa1101 |
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