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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership, serves tens of thousands of data depositors in the Americas and Oceania and makes 3D macromolecul...

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Autores principales: Burley, Stephen K, Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chen, Li, Crichlow, Gregg V, Christie, Cole H, Dalenberg, Kenneth, Di Costanzo, Luigi, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ganesan, Sai, Goodsell, David S, Ghosh, Sutapa, Green, Rachel Kramer, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Lawson, Catherine L, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Persikova, Irina, Randle, Chris, Rose, Alexander, Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Tao, Yi-Ping, Voigt, Maria, Westbrook, John D, Young, Jasmine Y, Zardecki, Christine, Zhuravleva, Marina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779003/
https://www.ncbi.nlm.nih.gov/pubmed/33211854
http://dx.doi.org/10.1093/nar/gkaa1038
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author Burley, Stephen K
Bhikadiya, Charmi
Bi, Chunxiao
Bittrich, Sebastian
Chen, Li
Crichlow, Gregg V
Christie, Cole H
Dalenberg, Kenneth
Di Costanzo, Luigi
Duarte, Jose M
Dutta, Shuchismita
Feng, Zukang
Ganesan, Sai
Goodsell, David S
Ghosh, Sutapa
Green, Rachel Kramer
Guranović, Vladimir
Guzenko, Dmytro
Hudson, Brian P
Lawson, Catherine L
Liang, Yuhe
Lowe, Robert
Namkoong, Harry
Peisach, Ezra
Persikova, Irina
Randle, Chris
Rose, Alexander
Rose, Yana
Sali, Andrej
Segura, Joan
Sekharan, Monica
Shao, Chenghua
Tao, Yi-Ping
Voigt, Maria
Westbrook, John D
Young, Jasmine Y
Zardecki, Christine
Zhuravleva, Marina
author_facet Burley, Stephen K
Bhikadiya, Charmi
Bi, Chunxiao
Bittrich, Sebastian
Chen, Li
Crichlow, Gregg V
Christie, Cole H
Dalenberg, Kenneth
Di Costanzo, Luigi
Duarte, Jose M
Dutta, Shuchismita
Feng, Zukang
Ganesan, Sai
Goodsell, David S
Ghosh, Sutapa
Green, Rachel Kramer
Guranović, Vladimir
Guzenko, Dmytro
Hudson, Brian P
Lawson, Catherine L
Liang, Yuhe
Lowe, Robert
Namkoong, Harry
Peisach, Ezra
Persikova, Irina
Randle, Chris
Rose, Alexander
Rose, Yana
Sali, Andrej
Segura, Joan
Sekharan, Monica
Shao, Chenghua
Tao, Yi-Ping
Voigt, Maria
Westbrook, John D
Young, Jasmine Y
Zardecki, Christine
Zhuravleva, Marina
author_sort Burley, Stephen K
collection PubMed
description The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership, serves tens of thousands of data depositors in the Americas and Oceania and makes 3D macromolecular structure data available at no charge and without restrictions to millions of RCSB.org users around the world, including >660 000 educators, students and members of the curious public using PDB101.RCSB.org. PDB data depositors include structural biologists using macromolecular crystallography, nuclear magnetic resonance spectroscopy, 3D electron microscopy and micro-electron diffraction. PDB data consumers accessing our web portals include researchers, educators and students studying fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. During the past 2 years, the research-focused RCSB PDB web portal (RCSB.org) has undergone a complete redesign, enabling improved searching with full Boolean operator logic and more facile access to PDB data integrated with >40 external biodata resources. New features and resources are described in detail using examples that showcase recently released structures of SARS-CoV-2 proteins and host cell proteins relevant to understanding and addressing the COVID-19 global pandemic.
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spelling pubmed-77790032021-01-06 RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences Burley, Stephen K Bhikadiya, Charmi Bi, Chunxiao Bittrich, Sebastian Chen, Li Crichlow, Gregg V Christie, Cole H Dalenberg, Kenneth Di Costanzo, Luigi Duarte, Jose M Dutta, Shuchismita Feng, Zukang Ganesan, Sai Goodsell, David S Ghosh, Sutapa Green, Rachel Kramer Guranović, Vladimir Guzenko, Dmytro Hudson, Brian P Lawson, Catherine L Liang, Yuhe Lowe, Robert Namkoong, Harry Peisach, Ezra Persikova, Irina Randle, Chris Rose, Alexander Rose, Yana Sali, Andrej Segura, Joan Sekharan, Monica Shao, Chenghua Tao, Yi-Ping Voigt, Maria Westbrook, John D Young, Jasmine Y Zardecki, Christine Zhuravleva, Marina Nucleic Acids Res Database Issue The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership, serves tens of thousands of data depositors in the Americas and Oceania and makes 3D macromolecular structure data available at no charge and without restrictions to millions of RCSB.org users around the world, including >660 000 educators, students and members of the curious public using PDB101.RCSB.org. PDB data depositors include structural biologists using macromolecular crystallography, nuclear magnetic resonance spectroscopy, 3D electron microscopy and micro-electron diffraction. PDB data consumers accessing our web portals include researchers, educators and students studying fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. During the past 2 years, the research-focused RCSB PDB web portal (RCSB.org) has undergone a complete redesign, enabling improved searching with full Boolean operator logic and more facile access to PDB data integrated with >40 external biodata resources. New features and resources are described in detail using examples that showcase recently released structures of SARS-CoV-2 proteins and host cell proteins relevant to understanding and addressing the COVID-19 global pandemic. Oxford University Press 2020-11-19 /pmc/articles/PMC7779003/ /pubmed/33211854 http://dx.doi.org/10.1093/nar/gkaa1038 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Burley, Stephen K
Bhikadiya, Charmi
Bi, Chunxiao
Bittrich, Sebastian
Chen, Li
Crichlow, Gregg V
Christie, Cole H
Dalenberg, Kenneth
Di Costanzo, Luigi
Duarte, Jose M
Dutta, Shuchismita
Feng, Zukang
Ganesan, Sai
Goodsell, David S
Ghosh, Sutapa
Green, Rachel Kramer
Guranović, Vladimir
Guzenko, Dmytro
Hudson, Brian P
Lawson, Catherine L
Liang, Yuhe
Lowe, Robert
Namkoong, Harry
Peisach, Ezra
Persikova, Irina
Randle, Chris
Rose, Alexander
Rose, Yana
Sali, Andrej
Segura, Joan
Sekharan, Monica
Shao, Chenghua
Tao, Yi-Ping
Voigt, Maria
Westbrook, John D
Young, Jasmine Y
Zardecki, Christine
Zhuravleva, Marina
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title_full RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title_fullStr RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title_full_unstemmed RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title_short RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
title_sort rcsb protein data bank: powerful new tools for exploring 3d structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779003/
https://www.ncbi.nlm.nih.gov/pubmed/33211854
http://dx.doi.org/10.1093/nar/gkaa1038
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