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Open Targets Platform: supporting systematic drug–target identification and prioritisation
The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779013/ https://www.ncbi.nlm.nih.gov/pubmed/33196847 http://dx.doi.org/10.1093/nar/gkaa1027 |
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author | Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Gonzalez-Uriarte, Asier Malangone, Cinzia Miranda, Alfredo Fumis, Luca Carvalho-Silva, Denise Spitzer, Michaela Baker, Jarrod Ferrer, Javier Raies, Arwa Razuvayevskaya, Olesya Faulconbridge, Adam Petsalaki, Eirini Mutowo, Prudence Machlitt-Northen, Sandra Peat, Gareth McAuley, Elaine Ong, Chuang Kee Mountjoy, Edward Ghoussaini, Maya Pierleoni, Andrea Papa, Eliseo Pignatelli, Miguel Koscielny, Gautier Karim, Mohd Schwartzentruber, Jeremy Hulcoop, David G Dunham, Ian McDonagh, Ellen M |
author_facet | Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Gonzalez-Uriarte, Asier Malangone, Cinzia Miranda, Alfredo Fumis, Luca Carvalho-Silva, Denise Spitzer, Michaela Baker, Jarrod Ferrer, Javier Raies, Arwa Razuvayevskaya, Olesya Faulconbridge, Adam Petsalaki, Eirini Mutowo, Prudence Machlitt-Northen, Sandra Peat, Gareth McAuley, Elaine Ong, Chuang Kee Mountjoy, Edward Ghoussaini, Maya Pierleoni, Andrea Papa, Eliseo Pignatelli, Miguel Koscielny, Gautier Karim, Mohd Schwartzentruber, Jeremy Hulcoop, David G Dunham, Ian McDonagh, Ellen M |
author_sort | Ochoa, David |
collection | PubMed |
description | The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source. Since our last update two years ago, we have had 10 releases to maintain and continuously improve evidence for target–disease relationships from 20 different data sources. In addition, we have integrated new evidence from key datasets, including prioritised targets identified from genome-wide CRISPR knockout screens in 300 cancer models (Project Score), and GWAS/UK BioBank statistical genetic analysis evidence from the Open Targets Genetics Portal. We have evolved our evidence scoring framework to improve target identification. To aid the prioritisation of targets and inform on the potential impact of modulating a given target, we have added evaluation of post-marketing adverse drug reactions and new curated information on target tractability and safety. We have also developed the user interface and backend technologies to improve performance and usability. In this article, we describe the latest enhancements to the Platform, to address the fundamental challenge that developing effective and safe drugs is difficult and expensive. |
format | Online Article Text |
id | pubmed-7779013 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-77790132021-01-06 Open Targets Platform: supporting systematic drug–target identification and prioritisation Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Gonzalez-Uriarte, Asier Malangone, Cinzia Miranda, Alfredo Fumis, Luca Carvalho-Silva, Denise Spitzer, Michaela Baker, Jarrod Ferrer, Javier Raies, Arwa Razuvayevskaya, Olesya Faulconbridge, Adam Petsalaki, Eirini Mutowo, Prudence Machlitt-Northen, Sandra Peat, Gareth McAuley, Elaine Ong, Chuang Kee Mountjoy, Edward Ghoussaini, Maya Pierleoni, Andrea Papa, Eliseo Pignatelli, Miguel Koscielny, Gautier Karim, Mohd Schwartzentruber, Jeremy Hulcoop, David G Dunham, Ian McDonagh, Ellen M Nucleic Acids Res Database Issue The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source. Since our last update two years ago, we have had 10 releases to maintain and continuously improve evidence for target–disease relationships from 20 different data sources. In addition, we have integrated new evidence from key datasets, including prioritised targets identified from genome-wide CRISPR knockout screens in 300 cancer models (Project Score), and GWAS/UK BioBank statistical genetic analysis evidence from the Open Targets Genetics Portal. We have evolved our evidence scoring framework to improve target identification. To aid the prioritisation of targets and inform on the potential impact of modulating a given target, we have added evaluation of post-marketing adverse drug reactions and new curated information on target tractability and safety. We have also developed the user interface and backend technologies to improve performance and usability. In this article, we describe the latest enhancements to the Platform, to address the fundamental challenge that developing effective and safe drugs is difficult and expensive. Oxford University Press 2020-11-16 /pmc/articles/PMC7779013/ /pubmed/33196847 http://dx.doi.org/10.1093/nar/gkaa1027 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Gonzalez-Uriarte, Asier Malangone, Cinzia Miranda, Alfredo Fumis, Luca Carvalho-Silva, Denise Spitzer, Michaela Baker, Jarrod Ferrer, Javier Raies, Arwa Razuvayevskaya, Olesya Faulconbridge, Adam Petsalaki, Eirini Mutowo, Prudence Machlitt-Northen, Sandra Peat, Gareth McAuley, Elaine Ong, Chuang Kee Mountjoy, Edward Ghoussaini, Maya Pierleoni, Andrea Papa, Eliseo Pignatelli, Miguel Koscielny, Gautier Karim, Mohd Schwartzentruber, Jeremy Hulcoop, David G Dunham, Ian McDonagh, Ellen M Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title | Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title_full | Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title_fullStr | Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title_full_unstemmed | Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title_short | Open Targets Platform: supporting systematic drug–target identification and prioritisation |
title_sort | open targets platform: supporting systematic drug–target identification and prioritisation |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779013/ https://www.ncbi.nlm.nih.gov/pubmed/33196847 http://dx.doi.org/10.1093/nar/gkaa1027 |
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