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Open Targets Platform: supporting systematic drug–target identification and prioritisation

The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source...

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Autores principales: Ochoa, David, Hercules, Andrew, Carmona, Miguel, Suveges, Daniel, Gonzalez-Uriarte, Asier, Malangone, Cinzia, Miranda, Alfredo, Fumis, Luca, Carvalho-Silva, Denise, Spitzer, Michaela, Baker, Jarrod, Ferrer, Javier, Raies, Arwa, Razuvayevskaya, Olesya, Faulconbridge, Adam, Petsalaki, Eirini, Mutowo, Prudence, Machlitt-Northen, Sandra, Peat, Gareth, McAuley, Elaine, Ong, Chuang Kee, Mountjoy, Edward, Ghoussaini, Maya, Pierleoni, Andrea, Papa, Eliseo, Pignatelli, Miguel, Koscielny, Gautier, Karim, Mohd, Schwartzentruber, Jeremy, Hulcoop, David G, Dunham, Ian, McDonagh, Ellen M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779013/
https://www.ncbi.nlm.nih.gov/pubmed/33196847
http://dx.doi.org/10.1093/nar/gkaa1027
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author Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Gonzalez-Uriarte, Asier
Malangone, Cinzia
Miranda, Alfredo
Fumis, Luca
Carvalho-Silva, Denise
Spitzer, Michaela
Baker, Jarrod
Ferrer, Javier
Raies, Arwa
Razuvayevskaya, Olesya
Faulconbridge, Adam
Petsalaki, Eirini
Mutowo, Prudence
Machlitt-Northen, Sandra
Peat, Gareth
McAuley, Elaine
Ong, Chuang Kee
Mountjoy, Edward
Ghoussaini, Maya
Pierleoni, Andrea
Papa, Eliseo
Pignatelli, Miguel
Koscielny, Gautier
Karim, Mohd
Schwartzentruber, Jeremy
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
author_facet Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Gonzalez-Uriarte, Asier
Malangone, Cinzia
Miranda, Alfredo
Fumis, Luca
Carvalho-Silva, Denise
Spitzer, Michaela
Baker, Jarrod
Ferrer, Javier
Raies, Arwa
Razuvayevskaya, Olesya
Faulconbridge, Adam
Petsalaki, Eirini
Mutowo, Prudence
Machlitt-Northen, Sandra
Peat, Gareth
McAuley, Elaine
Ong, Chuang Kee
Mountjoy, Edward
Ghoussaini, Maya
Pierleoni, Andrea
Papa, Eliseo
Pignatelli, Miguel
Koscielny, Gautier
Karim, Mohd
Schwartzentruber, Jeremy
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
author_sort Ochoa, David
collection PubMed
description The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source. Since our last update two years ago, we have had 10 releases to maintain and continuously improve evidence for target–disease relationships from 20 different data sources. In addition, we have integrated new evidence from key datasets, including prioritised targets identified from genome-wide CRISPR knockout screens in 300 cancer models (Project Score), and GWAS/UK BioBank statistical genetic analysis evidence from the Open Targets Genetics Portal. We have evolved our evidence scoring framework to improve target identification. To aid the prioritisation of targets and inform on the potential impact of modulating a given target, we have added evaluation of post-marketing adverse drug reactions and new curated information on target tractability and safety. We have also developed the user interface and backend technologies to improve performance and usability. In this article, we describe the latest enhancements to the Platform, to address the fundamental challenge that developing effective and safe drugs is difficult and expensive.
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spelling pubmed-77790132021-01-06 Open Targets Platform: supporting systematic drug–target identification and prioritisation Ochoa, David Hercules, Andrew Carmona, Miguel Suveges, Daniel Gonzalez-Uriarte, Asier Malangone, Cinzia Miranda, Alfredo Fumis, Luca Carvalho-Silva, Denise Spitzer, Michaela Baker, Jarrod Ferrer, Javier Raies, Arwa Razuvayevskaya, Olesya Faulconbridge, Adam Petsalaki, Eirini Mutowo, Prudence Machlitt-Northen, Sandra Peat, Gareth McAuley, Elaine Ong, Chuang Kee Mountjoy, Edward Ghoussaini, Maya Pierleoni, Andrea Papa, Eliseo Pignatelli, Miguel Koscielny, Gautier Karim, Mohd Schwartzentruber, Jeremy Hulcoop, David G Dunham, Ian McDonagh, Ellen M Nucleic Acids Res Database Issue The Open Targets Platform (https://www.targetvalidation.org/) provides users with a queryable knowledgebase and user interface to aid systematic target identification and prioritisation for drug discovery based upon underlying evidence. It is publicly available and the underlying code is open source. Since our last update two years ago, we have had 10 releases to maintain and continuously improve evidence for target–disease relationships from 20 different data sources. In addition, we have integrated new evidence from key datasets, including prioritised targets identified from genome-wide CRISPR knockout screens in 300 cancer models (Project Score), and GWAS/UK BioBank statistical genetic analysis evidence from the Open Targets Genetics Portal. We have evolved our evidence scoring framework to improve target identification. To aid the prioritisation of targets and inform on the potential impact of modulating a given target, we have added evaluation of post-marketing adverse drug reactions and new curated information on target tractability and safety. We have also developed the user interface and backend technologies to improve performance and usability. In this article, we describe the latest enhancements to the Platform, to address the fundamental challenge that developing effective and safe drugs is difficult and expensive. Oxford University Press 2020-11-16 /pmc/articles/PMC7779013/ /pubmed/33196847 http://dx.doi.org/10.1093/nar/gkaa1027 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Ochoa, David
Hercules, Andrew
Carmona, Miguel
Suveges, Daniel
Gonzalez-Uriarte, Asier
Malangone, Cinzia
Miranda, Alfredo
Fumis, Luca
Carvalho-Silva, Denise
Spitzer, Michaela
Baker, Jarrod
Ferrer, Javier
Raies, Arwa
Razuvayevskaya, Olesya
Faulconbridge, Adam
Petsalaki, Eirini
Mutowo, Prudence
Machlitt-Northen, Sandra
Peat, Gareth
McAuley, Elaine
Ong, Chuang Kee
Mountjoy, Edward
Ghoussaini, Maya
Pierleoni, Andrea
Papa, Eliseo
Pignatelli, Miguel
Koscielny, Gautier
Karim, Mohd
Schwartzentruber, Jeremy
Hulcoop, David G
Dunham, Ian
McDonagh, Ellen M
Open Targets Platform: supporting systematic drug–target identification and prioritisation
title Open Targets Platform: supporting systematic drug–target identification and prioritisation
title_full Open Targets Platform: supporting systematic drug–target identification and prioritisation
title_fullStr Open Targets Platform: supporting systematic drug–target identification and prioritisation
title_full_unstemmed Open Targets Platform: supporting systematic drug–target identification and prioritisation
title_short Open Targets Platform: supporting systematic drug–target identification and prioritisation
title_sort open targets platform: supporting systematic drug–target identification and prioritisation
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7779013/
https://www.ncbi.nlm.nih.gov/pubmed/33196847
http://dx.doi.org/10.1093/nar/gkaa1027
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